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G2D: From Global to Dense Radiography Representation Learning via Vision-Language Pre-training

NeurIPS 2024 · Vision-language and multimodal › Human and embodied modeling · approach: Medical vision-language models · 1 citations (OpenAlex)

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Proposes G2D, a medical vision-language pre-training framework that adds a parameter-free pseudo-segmentation pretext task, with masks derived from attention maps, to learn global and dense chest X-ray representations from image-report pairs.

Problem

Medical VLP methods align images with whole reports, which gives weak pixel-level supervision, so learned representations transfer poorly to dense prediction tasks such as segmentation and detection.

Approach

Build pseudo segmentation masks on the fly from the image encoder's multi-head attention maps (body-mask filtering, 85th-percentile thresholding, bilateral smoothing) and train an image decoder to predict them jointly with the vision-language contrastive loss, so the dense pretext task needs no extra trainable parameters or annotations.

Key results

Measured effects reported in the paper

What was changedWhereMeasuredEffect
add pseudo segmentation instead of decoder-level reconstruction (ablation)G2D · SIIM segmentationDice: 53.4$\pm$1.3 -> 65.6$\pm$1.7Helped
add a decoder-level pseudo-segmentation constraint (ablation)G2D · SIIM segmentationDice: 49.2$\pm$1.5 -> 65.6$\pm$1.7Helped
set pseudo-mask threshold to the 85% percentile rather than 75% percentile (ablation)G2D · SIIM segmentationDice: 63.0$\pm$2.1 -> 65.6$\pm$1.7Helped
set pseudo-mask threshold to the 85% percentile rather than median (ablation)G2D · SIIM segmentationDice: 58.8$\pm$1.6 -> 65.6$\pm$1.7Helped
set pseudo-mask threshold to the 85% percentile rather than GMM (ablation)G2D · SIIM segmentationDice: 59.2$\pm$1.5 -> 65.6$\pm$1.7Helped
use attention-map aggregation across heads (ablation)G2D · SIIM segmentationDice: 62.1$\pm$2.2 -> 65.6$\pm$1.7Helped
use three attention heads instead of one or two (ablation)G2D · SIIM segmentationDice: 63.4$\pm$2.0; 64.7$\pm$1.6 -> 65.6$\pm$1.7Helped
use four rather than three attention heads (ablation)G2D · SIIM segmentationDice: 65.6$\pm$1.7 -> 65.3$\pm$1.6Hurt
use a 128-dimensional rather than 256-dimensional projector (ablation)G2D · SIIM segmentationDice: 64.9$\pm$1.9 -> 65.6$\pm$1.7Helped
use a 256-dimensional rather than 128-dimensional projector (ablation)G2D · RSNA object detectionmAP: 15.9$\pm$0.8 -> 16.1$\pm$1.1Helped
apply body-mask filtering (ablation)G2D · SIIM segmentationDice: 63.4$\pm$1.5 -> 65.6$\pm$1.7Helped
apply edge smoothing (ablation)G2D · SIIM segmentationDice: 64.1$\pm$1.2 -> 65.6$\pm$1.7Helped

Surprising findings

Limitations

Experimental setup

Datasets: MIMIC-CXR RSNA Pneumonia SIIM Object-CXR CheXpert CXR14 COVIDx

Benchmarks: SIIM RSNA Pneumonia Object-CXR CXR14 CheXpert COVIDx

Metrics: Dice mAP AUC F1 ACC recall IoU

Baselines: ConVIRT GLoRIA GLoRIA-MIMIC MGCA M-FLAG MedKLIP BioViL KAD CheXzero MRM ImageNet Init Random Init

Builds on: CLIP ConVIRT MedSAM U-Net ClinicalBERT

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