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Knowledge Transfer Scaling Laws for 3D Medical Imaging
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Proposes a transfer-aware scaling law with domain-specific power-law exponents and an asymmetric cross-domain transfer matrix to optimize data allocation for MAE pretraining across six 3D CT/MRI/PET domains.
Problem
Choosing how much of each 3D medical imaging domain (CT, MRI, PET) to use under a fixed pretraining token budget is typically heuristic (uniform or data-proportional), ignoring heterogeneous scaling and asymmetric cross-domain transfer.
Approach
Model per-domain MAE loss as a power law in effective budget, where effective budget is a sum of source allocations weighted by a directed transfer matrix tau_ij; fit parameters from K^2 small pure-domain proxy runs and optimize the mixture in closed form with SLSQP, yielding compute-dependent allocations with hub-and-island structure.
Key results
- Transfer-Aware allocation reduces mean MAE at B=50K to 0.0451 vs 0.0712 for Data-Proportional (up to 58% relative improvement).
- Scaling law fit on 10K-100K extrapolates to 200K with predicted 0.0227 vs observed 0.0224 mean loss; per-domain r=0.989.
- Transfer-Aware improves downstream segmentation Dice (e.g., HECKTOR 67.8 to 71.1, BraTS T2 61.4 to 65.4) and classification (SynBrain-PET AUC 94.5 to 95.9) over Data-Proportional.
Surprising findings
- Transfer-Aware allocation gives HN-PET (island) 56.3% of budget yet also improves floor domains via incoming transfer.
- Relative advantage over data-proportional narrows at B=200K, suggesting proxy model nears loss floor or capacity limit.
Limitations
- Assumes linear composition of transfer contributions, missing synergistic or interfering interactions between sources.
- Transfer matrix estimated once from small proxy runs and held constant across budgets; fixed model size (12M ViT).
- Optimizes MAE reconstruction proxy rather than clinical outcomes; advantage narrows at largest budget.
Experimental setup
Datasets: AMOS 2022 BraTS 2023 HECKTOR 2025 BHSD 2024 OASIS-1 SynBrain-PET OrganMNIST3D CPAISD
Benchmarks: AMOS 2022 BraTS 2023 HECKTOR 2025 BHSD OASIS-1 SynBrain-PET OrganMNIST3D
Metrics: MAE reconstruction loss Dice accuracy AUC Pearson correlation
Baselines: Uniform Data-Proportional Transfer-Naive From scratch Single-Modality only
Builds on: neural scaling laws data mixing laws RegMix UNETR masked autoencoder
Closest papers by meaning
- How Well Do Supervised 3D Models Transfer to Medical Imaging Tasks? (ICLR 2024 · similarity 0.90)
- Perturbating, Tuning, and Collaborating: Harnessing Vision Foundation Models for Single Domain Generalization on Medical Imaging (AAAI 2025 · similarity 0.87)
- Training Like a Medical Resident: Context-Prior Learning Toward Universal Medical Image Segmentation (CVPR 2024 · similarity 0.87)
- Autoregressive Sequence Modeling for 3D Medical Image Representation (AAAI 2025 · similarity 0.86)
- Better Tokens for Better 3D: Advancing Vision-Language Modeling in 3D Medical Imaging (NeurIPS 2025 · similarity 0.86)
- Learning General-purpose Biomedical Volume Representations using Randomized Synthesis (ICLR 2025 · similarity 0.86)
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