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MMed-RAG: Versatile Multimodal RAG System for Medical Vision Language Models
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Proposes MMed-RAG, a multimodal RAG system for Med-LVLMs combining domain-aware retrieval, similarity-gap adaptive context selection, and RAG-based DPO fine-tuning to improve factual accuracy across radiology, ophthalmology, and pathology.
Problem
Med-LVLMs produce non-factual responses; existing medical RAG methods are dataset-specific and cause cross-modal and overall misalignment when retrieved contexts are added.
Approach
Routes each medical image to a domain-specific CLIP-style retriever via a fine-tuned BiomedCLIP domain classifier, truncates retrieved contexts at large similarity-ratio drops, and fine-tunes the Med-LVLM with DPO on preference pairs built from noised-image negatives and with/without-retrieval correctness to align the model with both image and retrieved knowledge.
Key results
- On medical VQA, MMed-RAG improves LLaVA-Med-1.5 by 18.5% on average and beats the best RAG baseline (RULE) by 2.8%.
- On report generation, MMed-RAG improves the original Med-LVLM by 69.1% and outperforms RAG baselines by 16.1%.
- Ablation on IU-Xray VQA: domain-aware retrieval raises accuracy from 68.99 to 77.12, context selection to 79.56, and RAG-PT to 85.80.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| add domain-aware retrieval (ablation) | LLaVA-Med-1.5 · IU-Xray VQA | score: 68.99 -> 77.12 | Helped |
| add domain-aware retrieval (ablation) | LLaVA-Med-1.5 · IU-Xray report generation | score: 10.04 -> 13.23 | Helped |
| add domain-aware retrieval (ablation) | LLaVA-Med-1.5 · Harvard-FairVLMed VQA | score: 66.63 -> 72.69 | Helped |
| add domain-aware retrieval (ablation) | LLaVA-Med-1.5 · Harvard-FairVLMed report generation | score: 13.41 -> 15.89 | Helped |
| add adaptive retrieved context selection after DR (ablation) | LLaVA-Med-1.5 + DR · IU-Xray VQA | score: 77.12 -> 79.56 | Helped |
| add adaptive retrieved context selection after DR (ablation) | LLaVA-Med-1.5 + DR · IU-Xray report generation | score: 13.23 -> 17.92 | Helped |
| add adaptive retrieved context selection after DR (ablation) | LLaVA-Med-1.5 + DR · Harvard-FairVLMed VQA | score: 72.69 -> 75.74 | Helped |
| add adaptive retrieved context selection after DR (ablation) | LLaVA-Med-1.5 + DR · Harvard-FairVLMed report generation | score: 15.89 -> 17.22 | Helped |
| add RAG-based preference fine-tuning after DR and RCS (ablation) | LLaVA-Med-1.5 + DR + RCS · IU-Xray VQA | score: 79.56 -> 85.80 | Helped |
| add RAG-based preference fine-tuning after DR and RCS (ablation) | LLaVA-Med-1.5 + DR + RCS · IU-Xray report generation | score: 17.92 -> 29.80 | Helped |
| add RAG-based preference fine-tuning after DR and RCS (ablation) | LLaVA-Med-1.5 + DR + RCS · Harvard-FairVLMed VQA | score: 75.74 -> 87.18 | Helped |
| add RAG-based preference fine-tuning after DR and RCS (ablation) | LLaVA-Med-1.5 + DR + RCS · Harvard-FairVLMed report generation | score: 17.22 -> 20.42 | Helped |
Surprising findings
- Adding retrieved reports to LLaVA-Med-1.5 led 55.08% of noisy-image cases to copy the retrieved answer, indicating the model ignores the image when retrieval is present.
- A general retriever mixing all modalities underperformed domain-specific retrievers, even with MoE (CLIP-MoE) variants.
Limitations
- Dataset-specific report-based VQA construction via GPT-4 with yes/no answers and manual filtering may limit generality.
- Domain-specific retrievers require retraining when a new modality is encountered.
- Gains rely on a fixed threshold gamma for context truncation.
Experimental setup
Datasets: MIMIC-CXR IU-Xray Harvard-FairVLMed PMC-OA Quilt-1M
Benchmarks: MIMIC-CXR IU-Xray Harvard-FairVLMed PMC-OA Quilt-1M PubMedVision
Metrics: Accuracy F1 AUROC BLEU ROUGE-L METEOR
Baselines: Greedy decoding Beam search DoLa OPERA VCD MedDr FactMM-RAG RULE Med-Flamingo MedVInT RadFM miniGPT-Med
Builds on: DPO LLaVA-Med CLIP RULE BiomedCLIP
Closest papers by meaning
- GMAI-MMBench: A Comprehensive Multimodal Evaluation Benchmark Towards General Medical AI (NeurIPS 2024 · similarity 0.89)
- MMedPO: Aligning Medical Vision-Language Models with Clinical-Aware Multimodal Preference Optimization (ICML 2025 · similarity 0.88)
- GMAI-VL & GMAI-VL-5.5M: A Large Vision-Language Model and a Comprehensive Multimodal Dataset Towards General Medical AI (AAAI 2026 · similarity 0.87)
- Multi-OphthaLingua: A Multilingual Benchmark for Assessing and Debiasing LLM Ophthalmological QA in LMICs (AAAI 2025 · similarity 0.87)
- How Do Medical MLLMs Fail? A Study on Visual Grounding in Medical Images (ICLR 2026 · similarity 0.87)
- MedSIGHT: Towards Grounded Visual Comprehension in Medical Large Vision-Language Models (ICML 2026 · similarity 0.87)
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