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Probabilistic Token Alignment for Large Language Model Fusion
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Proposes PTA-LLM, which fuses pre-trained LLMs with different tokenizers by aligning their token distributions via dynamic token pairing and Sinkhorn-based optimal transport, then distilling into a Llama-2 7B target model.
Problem
Knowledge fusion of heterogeneous LLMs depends on manually predefined, hard token alignment between different tokenizers, which generalizes poorly and degrades performance on some tasks.
Approach
Reformulates token-level logit alignment as an optimal transport problem with an edit-distance-plus-logit cost, using dynamic token pairing followed by Sinkhorn soft alignment, so that the fused target distribution is a soft, distribution-aware mapping rather than a hard vocabulary mapping.
Key results
- PTA-LLM averages 29.00 across six benchmarks (78 tasks), a 1.72% relative gain over FuseLLM (28.51) and above Llama-2 CLM (27.90).
- On MultiPL-E, PTA-LLM reaches 15.88 vs. 15.56 for FuseLLM (+2.06%); on TyDi QA it reaches 34.07 vs. 32.99 (+3.27%).
- On the stability analysis of tasks where FuseLLM degrades, PTA-LLM reduces average degradation relative to Llama-2 from -13.04% to -4.07%.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| replace FuseLLM's hard token mapping with probabilistic optimal-transport alignment | Llama-2 7B · Avg. 6 Benchmarks (78 tasks) | average score: 28.51 -> 29.00 | Helped |
| replace FuseLLM's hard token mapping with probabilistic optimal-transport alignment | Llama-2 7B · MultiPL-E | pass@1: 18.11 -> 15.88 | Hurt |
| replace FuseLLM's hard token mapping with probabilistic optimal-transport alignment | Llama-2 7B · BBH | score: 41.01 -> 41.08 | Helped |
| use threshold 1e-5 instead of 1e-4 (ablation) | PTA-LLM · BBH | score: 40.54 -> 41.08 | Helped |
| use threshold 1e-5 instead of 1e-4 (ablation) | PTA-LLM · ME | score: 15.88 -> 15.82 | Hurt |
| use threshold 1e-5 instead of 1e-4 (ablation) | PTA-LLM · MMLU | score: 48.99 -> 49.38 | Helped |
| use transport window size 5 instead of 10 (ablation) | PTA-LLM · BBH | score: 41.08 -> 40.68 | Hurt |
| use transport window size 5 instead of 10 (ablation) | PTA-LLM · ME | score: 15.88 -> 15.61 | Hurt |
| use transport window size 5 instead of 10 (ablation) | PTA-LLM · MMLU | score: 48.99 -> 49.38 | No clear effect |
| use combination weight 0.8 instead of 0.9 (ablation) | PTA-LLM · BBH | score: 40.39 -> 41.08 | Helped |
| use combination weight 0.8 instead of 0.9 (ablation) | PTA-LLM · ME | score: 15.72 -> 15.88 | Helped |
| use combination weight 0.8 instead of 0.9 (ablation) | PTA-LLM · MMLU | score: 48.93 -> 49.38 | Helped |
Surprising findings
- Fusing lower-performing source models (e.g., MPT on MMLU) yields the smallest gains, and the BBH gain over FuseLLM is marginal (+0.17%), attributed to weak source models.
Limitations
- Optimal transport step adds computational overhead; the authors suggest exploring faster alternatives such as Greenkhorn.
- Gains are modest on some benchmarks (e.g., BBH +0.17% over FuseLLM) and depend on quality of source models.
- Transport is performed in softmax-probability space, and the authors note that logit-space transport differs fundamentally and is left for future work.
Experimental setup
Datasets: MiniPile The Pile GitHub (HumanEval pilot)
Benchmarks: GSM8K BBH MultiPL-E MMLU ToxiGen TyDi QA HumanEval HellaSwag
Metrics: accuracy pass@1 exact match non-toxicity rate
Baselines: Llama-2 OpenLLaMA MPT Llama-2 CLM FuseLLM
Builds on: FuseLLM MinED token alignment Sinkhorn algorithm
Closest papers by meaning
- A Probabilistic Perspective on Unlearning and Alignment for Large Language Models (ICLR 2025 · similarity 0.90)
- Leveraging Importance Sampling to Detach Alignment Modules from Large Language Models (NeurIPS 2025 · similarity 0.89)
- Knowledge Fusion of Large Language Models (ICLR 2024 · similarity 0.89)
- Leveraging robust optimization for llm alignment under distribution shifts (NeurIPS 2025 · similarity 0.88)
- L3Ms — Lagrange Large Language Models (ICLR 2025 · similarity 0.88)
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