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Amortized Bayesian Experimental Design for Decision-Making

NeurIPS 2024 · Probabilistic and scientific modeling › Molecules and proteins · approach: Counterfactual and statistical explanations · 0 citations (OpenAlex)

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Proposes TNDP, a Transformer neural process with dual heads (query policy and predictive distribution) trained to maximize decision utility gain, for amortized decision-aware Bayesian experimental design.

Problem

Standard amortized Bayesian experimental design selects experiments to maximize parameter information rather than the quality of a downstream decision, and needs extra computation to make that decision.

Approach

Introduces Decision Utility Gain (DUG) as the design reward and a Transformer Neural Decision Process with a query head that proposes designs and a prediction head that approximates the predictive distribution, trained jointly with REINFORCE so both design and decision are amortized in one forward pass.

Key results

Measured effects reported in the paper

What was changedWhereMeasuredEffect
Use TNDP's learned query head instead of random sampling (ablation)TNDP · Decision-aware active learningdecision accuracyHelped
Use a non-myopic objective instead of the myopic objective (α=0) (ablation)TNDP · Decision-aware active learningdecision accuracyHelped
Use TNDP instead of non-amortized active-learning methodsDecision-aware active learning · Decision-aware active learningdecision accuracyHelped
Use TNDP instead of BO baselines and PFNs4BOTop-k hyperparameter optimization · HPO-B meta-datasetsutilityHelped
Use TNDP instead of random searchRetrosynthesis planning · Retrosynthesis planningtop-k route utilityHelped

Limitations

Experimental setup

Datasets: HPO-B synthetic GP functions non-public retrosynthesis meta-dataset

Benchmarks: HPO-B (ranger, svm, rpart, xgboost) synthetic decision-aware active learning toy synthetic regression retrosynthesis top-k routes

Metrics: proportion of correct decisions average utility (top-k sum of accuracies) acquisition time total time

Baselines: GP-RS GP-US GP-DUS GP-TEIG GP-DEIG TNDP-RS RS UCB EI PI PFNs4BO T-EIG

Builds on: Transformer neural process sPCE amortized BED REINFORCE loss-calibrated inference PFNs4BO

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