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Hierarchical Multi-Marginal Optimal Transport for Network Alignment
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Proposes HOT, a hierarchical multi-marginal optimal transport framework for aligning multiple networks, combining FGW-barycenter cluster-level alignment with a multi-marginal FGW node-level alignment solved by a proximal point method.
Problem
Multi-network alignment (finding node correspondences across K networks) is hard due to a lack of high-order discrepancy measures and an exponentially growing solution space.
Approach
Generalizes the fused Gromov-Wasserstein distance to a multi-marginal setting (MFGW) with a position-aware RWR-based cost tensor, and decomposes the problem hierarchically via FGW barycenter clusters so node-level MFGW subproblems are small; a proximal point method with KL regularization and Sinkhorn inner solves gives convergence to a local optimum.
Key results
- HOT outperforms the best consistency-based method by at least 55.3% in PH@10 and 51.9% in HH@10 on plain networks.
- HOT outperforms the best embedding-based method by at least 4.0% in PH@10 and 12.0% in HH@10 on plain networks.
- HOT achieves up to 360x speedup and 1000x memory reduction compared with the non-hierarchical solution when scaling number of graphs K.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| Use HOT instead of the best embedding-based competitor | Multi-network alignment · Plain networks | High-order Hits@10: 12.0% | Helped |
| Use HOT instead of the best OT-based competitor | Multi-network alignment · Plain networks | High-order Hits@10: 15.8% | Helped |
| Increase the number of clusters M (ablation) | HOT · ACM(A)-500 and DBLP(A)-500 | High-order Hits@10 | Mixed |
| Vary restart probability β (ablation) | HOT · DBLP(A)-500 | Pairwise Hits@10 | No clear effect |
| Increase α toward 1 (ablation) | HOT · DBLP(A)-500 | Pairwise Hits@10 | Hurt |
Surprising findings
- Pairwise FGW distances underestimate the joint MFGW distance: MFGW is lower bounded by the sum of all pairwise FGW distances.
Limitations
- Complexity remains exponential in the number of graphs K for node-level alignment.
- Only two levels (cluster and node) are considered; multi-level hierarchy is future work.
- Baselines with dense alignment tensors run out of memory for K>=5 or networks above 2000 nodes, so comparisons at scale are limited.
Experimental setup
Datasets: Douban ER DBLP ACM
Benchmarks: Douban-230 ER-500 DBLP-500 DBLP-1000 ACM(A)-1000 DBLP(A)-1000
Metrics: pairwise Hits@K high-order Hits@K MRR running time memory cost
Baselines: IsoRank FINAL MOANA SYTE CrossMNA NetTrans NeXtAlign Grad-Align GW FGW LOT S-GWL
Builds on: fused Gromov-Wasserstein distance multi-marginal optimal transport unified random walk with restart S-GWL Sinkhorn algorithm
Closest papers by meaning
- PLANETALIGN: A Comprehensive Python Library for Benchmarking Network Alignment (ICLR 2026 · similarity 0.88)
- Hypergraph Learning for Unsupervised Graph Alignment via Optimal Transport (AAAI 2025 · similarity 0.86)
- Chaining 2-FWL GNNs for Combinatorial Graph Alignment (NeurIPS 2026 · similarity 0.85)
- Hierarchical Refinement: Optimal Transport to Infinity and Beyond (ICML 2025 · similarity 0.85)
- Low-Rank Optimal Transport through Factor Relaxation with Latent Coupling (NeurIPS 2024 · similarity 0.85)
- Transfer Learning on Edge Connecting Probability Estimation Under Graphon Model (NeurIPS 2025 · similarity 0.84)
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