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Fitting summary statistics of neural data with a differentiable spiking network simulator

NeurIPS 2021 · Probabilistic and scientific modeling › Dynamical systems · approach: Low-rank and diffusion neural dynamics · 1 citations (OpenAlex)

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Measured effects reported in the paper

What was changedWhereMeasuredEffect
Add PSTH and noise-correlation sample-and-measure losses to MLERSNN on V1-dataset · V1-dataset test setNoise correlation R²: -0.91 -> 0.73Helped
Add PSTH and noise-correlation sample-and-measure losses to MLERSNN on V1-dataset · V1-dataset test setNegative log-likelihood: 0.370 -> 0.370No clear effect
Fit PSTH only, without noise-correlation matchingRSNN on V1-dataset · V1-dataset test setNoise correlation R²: -0.91 -> -3.3Hurt
Add a noise-correlation loss to PSTH fittingRSNN on V1-dataset · V1-dataset test setNoise correlation R²: -3.3 -> 0.80Helped
Add a hidden-neuron population rather than fitting only visible units (ablation)RSNN on synthetic data · Synthetic dataset, variable hidden-neuron countConnectivity matrix R²: -0.95 -> 0.50Helped
Increase the hidden population from 10 to 400 neurons (ablation)RSNN on synthetic data · Synthetic dataset, variable hidden-neuron countConnectivity matrix R²: 0.50 -> 0.62Helped
Increase the hidden population from 10 to 400 neurons (ablation)RSNN on synthetic data · Synthetic dataset, variable hidden-neuron countNoise correlation R²: 0.96 -> 0.95Mixed
Add visible PSTH and noise-correlation losses to ELBO+SM-h (ablation)RSNN with hidden neurons · Synthetic dataset, 500-neuron targetNoise correlation R²: 0.66±0.1 -> 0.95±0.2Helped
Add visible PSTH and noise-correlation losses to ELBO+SM-h (ablation)RSNN with hidden neurons · Synthetic dataset, 500-neuron targetConnectivity matrix R²: 0.56±0.0069 -> 0.63±0.013Helped
Use sample-and-measure fitting rather than MLE in the misspecified model that omits hidden neuronsRSNN on synthetic data · Synthetic dataset with hidden target neurons and visible-only studentNoise correlation R²: R²=0.95Helped
Fit with MLE plus PSTH and NC losses in the fully observed, identifiable setting (ablation)RSNN on synthetic data · Well-specified fully visible synthetic datasetConnectivity reconstructionNo clear effect
Replace the NC loss with the shuffled-trial NC variant (ablation)RSNN noise-correlation fitting · V1-datasetNoise-correlation fitHurt

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