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Federated Modality-Specific Encoders and Multimodal Anchors for Personalized Brain Tumor Segmentation
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Proposes FedMEMA, a federated learning framework for brain tumor segmentation with missing-modality clients that uses modality-specific shared encoders, a server fusion decoder, personalized client decoders, and multi-anchor multimodal prototypes calibrated via cross-attention.
Problem
Federated learning for multimodal medical imaging where participants hold only subsets of MRI modalities (inter-modal heterogeneity), requiring both a full-modal global server model and personalized missing-modal client models.
Approach
Exclusive federated encoder per modality with a server-side multimodal fusion decoder; the server extracts multiple K-means anchors per class from fused features and distributes them to clients, which calibrate their missing-modal features via scaled dot-product cross-attention (LACCA).
Key results
- On BraTS 2020 test (setting 1), FedMEMA reaches 62.01% average client mDSC and 82.11% server mDSC, versus 60.25% and 80.23% for the next best method FedIoT.
- In setting 2, FedMEMA achieves 63.59% client average and 83.27% server mDSC on the test set.
- Ablation on the validation set shows multi-anchor representations (3 anchors per class) outperform mono-anchor (64.13% vs 61.91% client average).
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| Use FedMEMA instead of FedIoT | federated brain tumor segmentation · BraTS 2020 test, Setting 1, client average | mDSC (%): 60.25 -> 62.01 | Helped |
| Use FedMEMA instead of FedIoT | federated brain tumor segmentation · BraTS 2020 test, Setting 1, server | mDSC (%): 80.23 -> 82.11 | Helped |
| Federate the encoder and personalize the decoder rather than federating the decoder (ablation) | FedAvg-style model · BraTS 2020 validation, Setting 1, client average | mDSC (%): 38.64 -> 48.58 | Helped |
| Use modality-specific encoders instead of the shared-encoder FedAvg variant (ablation) | federated brain tumor segmentation · BraTS 2020 validation, Setting 1, client average | mDSC (%): 48.58 -> 59.69 | Helped |
| Add LACCA with mono-anchor representations (ablation) | FedMEMA with modality-specific encoders · BraTS 2020 validation, Setting 1, client average | mDSC (%): 59.69 -> 61.91 | Helped |
| Replace mono-anchor representations with multi-anchor representations (ablation) | FedMEMA with LACCA · BraTS 2020 validation, Setting 1, client average | mDSC (%): 61.91 -> 64.13 | Helped |
| Use 3 anchors rather than 1, 2, 4, 5, or 7 (ablation) | FedMEMA anchor calibration · BraTS 2020 validation, Setting 1, client average | mDSC (%): 1: 61.91; 2: 63.56; 3: 64.13; 4: 63.45; 5: 63.38; 7: 63.60 | Mixed |
| Determine anchor cluster membership at feature level 4 rather than levels 1, 2, 3, or concatenated levels 1–4 (ablation) | FedMEMA anchor calibration · BraTS 2020 validation, Setting 1, client average | mDSC (%): 1: 62.99; 2: 63.08; 3: 63.28; 4: 64.13; 1--4: 63.05 | Mixed |
Surprising findings
- Specializing only normalization parameters (FedNorm) yields slight client gains but decreases server performance.
- The RFNet baseline, despite being robust to missing modalities, performs comparably to local training because it does not use extra client data.
Limitations
- Focuses on extreme monomodal clients; hetero-modal clients only addressed in supplementary experiments.
- Ignores intramodal heterogeneity across institutions.
- Assumes equal data sizes across clients with no dynamic weight assignment.
Experimental setup
Datasets: BraTS 2020 BraTS 2018
Benchmarks: BraTS 2020 BraTS 2018
Metrics: mean Dice similarity coefficient (mDSC)
Baselines: Local models RFNet FedAvg PerFL FedNorm CreamFL FedMSplit FedIoT
Builds on: FedAvg RFNet FedIoT CreamFL FedNorm
Closest papers by meaning
- Dual-calibrated Co-training Framework for Personalized Federated Semi-Supervised Medical Image Segmentation (AAAI 2025 · similarity 0.86)
- Semantic-guided Masked Mutual Learning for Multi-modal Brain Tumor Segmentation with Arbitrary Missing Modalities (AAAI 2025 · similarity 0.85)
- FedBiP: Heterogeneous One-Shot Federated Learning with Personalized Latent Diffusion Models (CVPR 2025 · similarity 0.85)
- Incomplete Multi-modal Brain Tumor Segmentation via Learnable Sorting State Space Model (CVPR 2025 · similarity 0.85)
- TMFormer: Token Merging Transformer for Brain Tumor Segmentation with Missing Modalities (AAAI 2024 · similarity 0.85)
- Overcoming Heterogeneous Data in Federated Medical Vision-Language Pre-training: A Triple-Embedding Model Selector Approach (AAAI 2025 · similarity 0.84)
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