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3D Self-Supervised Methods for Medical Imaging

NeurIPS 2020 · Label-efficient and robust learning › Self-supervised and contrastive · approach: Pretext-task visual pre-training · 127 citations (OpenAlex)

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Measured effects reported in the paper

What was changedWhereMeasuredEffect
Pretrain with a 3D self-supervised task rather than train from scratch3D segmentation models · BraTS 2018 and pancreas tumor segmentationSegmentation performanceHelped
Use full 3D context rather than pretraining on 2D slicesSelf-supervised pretraining for 3D segmentation · BraTS 2018 and pancreas tumor segmentationSegmentation performanceHelped
Pretrain with 3D-RPL3D U-Net · BraTS 2018 validationDice (ET and TC)Helped
Pretrain on a large unlabeled UK Biobank corpus, then fine-tune on the downstream dataset2D self-supervised methods · Diabetic Retinopathy 2019Quadratic Weighted KappaHelped
Use self-supervised pretraining instead of training from scratch3D segmentation models · Pancreas tumor segmentationSpeed of convergenceHelped
Use self-supervised pretraining instead of training from scratch2D classification models · Diabetic Retinopathy 2019Speed of convergenceHelped
Freeze the pretrained encoder for initial warm-up epochs, then fine-tune it (ablation)Pretrained 3D segmentation models · 3D segmentation tasksDownstream performanceHelped
Fine-tune the encoder immediately with a randomly initialized decoder (ablation)Pretrained 3D segmentation models · 3D segmentation tasksDownstream performanceHurt
Keep the encoder frozen throughout training (ablation)Pretrained models · Downstream tasksDownstream performanceHurt
Include each of the listed augmentations when forming Exemplar positives (ablation)3D-Exemplar · Downstream tasksDownstream performanceHelped

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