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Enabling hyperparameter optimization in sequential autoencoders for spiking neural data

NeurIPS 2019 · Probabilistic and scientific modeling › Dynamical systems · approach: Low-rank and diffusion neural dynamics · 22 citations (OpenAlex)

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Measured effects reported in the paper

What was changedWhereMeasuredEffect
Use sample validation instead of holding out entire trialsLFADS on the synthetic RNN dataset · Synthetic RNN datasetcorrespondence between validation loss and firing-rate R²Helped
Add coordinated dropout during trainingLFADS on the synthetic RNN dataset · Synthetic RNN datasetcorrespondence between standard validation loss and firing-rate R²Helped
Use coordinated dropout rather than sample validation aloneLFADS on the synthetic RNN dataset · Synthetic RNN datasetreliability of validation loss as a performance measureHelped
Apply coordinated dropout during trainingLinear autoencoder on noise-corrupted low-dimensional data · Synthetic low-dimensional datareconstruction loss on noise-free dataHelped
Use population-based hyperparameter optimization with coordinated dropout instead of fixed hyperparametersLFADS · Monkey J Maze, reduced training datasetshand-velocity decoding R²Helped
Use population-based hyperparameter optimization with coordinated dropout instead of fixed hyperparametersLFADS · Monkey J Maze, full training datasethand-velocity decoding R²No clear effect
Use the fixed hyperparameters selected for Monkey J Maze instead of the CursorJump hyperparametersLFADS · Monkey J Maze, reduced training datasetshand-velocity decoding R²Hurt
Increase coordinated-dropout keep ratio so more samples are seen as inputLFADS · Datasets with few observed dimensions relative to latent dimensionalitylatent-structure inferenceMixed

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