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Ophiuchus: Incentivizing Tool-augmented ''Think with Images'' for Joint Medical Segmentation, Understanding and Reasoning
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Ophiuchus trains a Qwen2.5-VL-7B medical MLLM to think with images by interleaving calls to zoom-in, SAM2 and BiomedParse tools, using cold-start SFT, self-reflection fine-tuning and agentic tool RL with GRPO.
Problem
Medical MLLMs reason only in text and cannot dynamically inspect fine-grained image regions, which hurts VQA, detection and reasoning-based segmentation.
Approach
Equip an MLLM with segmentation and zoom-in tools inside its chain of thought and train it in three stages (cold-start SFT, self-reflection SFT on trajectories where the tool sequence changed and correctness flipped, and RL with format, answer, and conditional tool-use rewards).
Key results
- Ophiuchus-7B reaches 68.0 average over seven out-of-domain VQA benchmarks, versus 49.3 for Qwen2.5-VL-7B and 59.0 for GPT-5 (zero-shot).
- On In-House-Seg, Ophiuchus achieves 67.5 DSC versus 65.8 for SAM 2 standalone and 66.2 for the SAM 2 + BiomedParse ensemble.
- Ablation: RL-only reaches 62.8 average and cold-start + RL reaches 65.7; full three-stage training reaches 68.1.
Surprising findings
- Ophiuchus invokes necessary tools on 93.7% of cases the base model fails, and makes unnecessary tool calls only 3.3% of the time.
- Zero-shot swap of SAM2 for MedSAM, SAM-Med2D or SAM yields only minor performance changes (67.3 to 68.1 average).
Limitations
- Training data depends on proprietary teacher models (Gemini-2.5-Pro, GPT-5) for QA and trajectory generation.
- Tool set limited to zoom-in, SAM2 and BiomedParse; authors acknowledge tool quality bounds extensibility claims.
- Segmentation evaluation may be affected by data leakage concerns from SAM2 pretraining data.
Experimental setup
Datasets: BiomedParseData Malenia PathVQA SLAKE VQA-RAD OmniMedVQA MMMU (H&M) MedXpertQA
Benchmarks: D_test-VQA PathVQA SLAKE VQA-RAD OmniMedVQA MMMU (H&M) MedXpertQA In-House-VQA In-Domain-Seg In-House-Seg
Metrics: accuracy DSC
Baselines: GPT-4.1 GPT-5 OpenAI-o3 Gemini 2.5 Pro InternVL3-8B Qwen2.5-VL-32B DeepEyes-7B Mini-o3-7B-v1 PixelReasoner-RL-v1-7B LLaVA-Med-7B HuatuoGPT-Vision-34B Med-R1-2B
Builds on: GRPO Qwen2.5-VL SAM2 BiomedParse DeepEyes VERL
Closest papers by meaning
- M3CoTBench: Benchmark Chain-of-Thought of MLLMs in Medical Image Understanding (ICLR 2026 · similarity 0.87)
- IBISAgent: Reinforcing Pixel-Level Visual Reasoning in MLLMs for Universal Biomedical Object Referring and Segmentation (CVPR 2026 · similarity 0.86)
- MedReasoner: Reinforcement Learning Drives Reasoning Grounding from Clinical Thought to Pixel-Level Precision (AAAI 2026 · similarity 0.86)
- Medical thinking with multiple images (ICLR 2026 · similarity 0.86)
- Med-CMR: A Fine-Grained Benchmark Integrating Visual Evidence and Clinical Logic for Medical Complex Multimodal Reasoning (CVPR 2026 · similarity 0.86)
- Beyond Classification Accuracy: Neural-MedBench and the Need for Deeper Reasoning Benchmarks (ICLR 2026 · similarity 0.86)
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