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CLIMB: Data Foundations for Large Scale Multimodal Clinical Foundation Models
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Introduces CLIMB, a 4.51M-sample, 44-dataset multimodal clinical benchmark spanning 2D/3D imaging, time series, graphs and multimodal data, and shows multitask pretraining on it helps understudied tasks, few-shot transfer, and unimodal-to-multimodal fusion.
Problem
Existing clinical benchmarks and models cover only a small set of modalities and tasks (mostly images and text), which limits development of large-scale holistic multimodal clinical foundation models.
Approach
Unify 44 public clinical datasets across 15 modalities into one benchmark with a shared label vocabulary and a QA variant (CLIMB-QA), then use multitask pretraining on it per modality and evaluate encoders, few-shot transfer, and unimodal-to-multimodal fusion.
Key results
- Multitask pretraining improves ECG dataset Ga AUC from 0.474 to 0.704 (+23 points) versus single-task training; COVID-US gains 0.3254 AUC.
- CLIMB-pretrained ConvNeXtV2 reaches 0.877 accuracy on CLIMB-QA versus 0.555 for fine-tuned LLaVA-Med average.
- Pretrained encoders on CLIMB achieve 2.61 MAE on length-of-stay with cross-attention fusion versus 2.77 for SoTA encoders, and 15.9% higher 8-shot mortality AUC.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| Use multitask rather than single-task pretraining | Clinical models on CLIMB · COVID-US | AUC: AUC gain of 0.3254 | Helped |
| Use multitask rather than single-task pretraining | ECG models · Georgia | AUC: from 0.474 to 0.704 | Helped |
| Use CLIMB-pretrained rather than standard pretrained weights | Few-shot clinical models · Ultrasound | AUC: 29.1% | Helped |
| Use CLIMB-pretrained rather than standard pretrained weights | Few-shot clinical models · CT scans | AUC: 28.7% | Helped |
| Use CLIMB-pretrained rather than standard pretrained weights | ECG-JEPA · ECG | performance: 36.8% | Helped |
| Use ConvNeXTv2 rather than MedViT | Multitask visual encoder · Overall imaging | performance: 35.9% | Helped |
| Fine-tune on CLIMB-QA rather than evaluate zero-shot | LLaVa-Med · CLIMB-QA | accuracy: 28.7% percentage points | Helped |
| Use CLIMB-pretrained encoders rather than other pretrained encoders | Multimodal MIMIC-IV prediction models · LOS prediction | MAE: 2.77 vs 2.61 | Helped |
| Use MLP fusion rather than cross-attention fusion | MIMIC-IV multimodal model · 48 IHM full | AUC: 0.786 -> 0.961 | Helped |
| Use cross-attention rather than MLP fusion | MIMIC-IV multimodal model · LOS prediction | MAE: 2.84 -> 2.61 | Helped |
| Use CLIMB-pretrained rather than publicly pretrained encoders | MIMIC-IV multimodal model with MLP fusion · 48 IHM 8-shot | AUC: 0.556 -> 0.672 | Helped |
Surprising findings
- General-domain ConvNeXtV2 outperforms clinical-specific encoders such as MedViT by 35.9% in the visual domain.
- Late fusion achieves near-zero sensitivity on 48-hour mortality prediction, effectively predicting the majority class.
Limitations
- Many constituent datasets require credentialed access or data use agreements, so the full benchmark is not fully open.
- Clinical LVLMs (LLaVA-Med) lag far behind dedicated vision encoders on CLIMB-QA, and dataset-specific SoTA models still outperform the pretrained models in some cases.
Experimental setup
Datasets: CLIMB PTB-XL Chapman-Shaoxing Georgia CPSC IIIC TUAB TUEV MIMIC-CXR CheXpert VinDr-CXR MIMIC-IV
Benchmarks: CLIMB CLIMB-QA MIMIC-IV
Metrics: AUC sensitivity specificity accuracy MAE
Baselines: MedViT PMC-CLIP RAD-DINO SBB2 Swin Transformer EVA-2 InternViT LLaVA-Med UniTS BIOT
Builds on: ConvNeXt V2 ECG-JEPA BIOT UniTS LLaVA-Med
Closest papers by meaning
- QoQ-Med: Building Multimodal Clinical Foundation Models with Domain-Aware GRPO Training (NeurIPS 2025 · similarity 0.86)
- GMAI-MMBench: A Comprehensive Multimodal Evaluation Benchmark Towards General Medical AI (NeurIPS 2024 · similarity 0.86)
- CardioLens: Revealing the Clinical Reality Gap of MLLMs via Multi-Sequence Cardiac MRI Evaluations (NeurIPS 2026 · similarity 0.86)
- MedMO: Grounding and Understanding Multimodal Large Language Model for Medical Images (CVPR 2026 · similarity 0.86)
- Touchstone Benchmark: Are We on the Right Way for Evaluating AI Algorithms for Medical Segmentation? (NeurIPS 2024 · similarity 0.85)
- MediConfusion: Can you trust your AI radiologist? Probing the reliability of multimodal medical foundation models (ICLR 2025 · similarity 0.85)
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