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Stability and Generalization Capability of Subgraph Reasoning Models for Inductive Knowledge Graph Completion
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Theoretical analysis of stability and generalization of subgraph reasoning models for inductive KGC, introducing Relational Tree Mover's Distance and a PAC-Bayesian bound linking stability to generalization gap, validated on WN18RR/FB15K-237/NELL-995 splits with 48 GraIL/NBFNet/RED-GNN variants.
Problem
Inductive knowledge graph completion with subgraph reasoning models lacks theoretical understanding of their stability and generalization capability.
Approach
Decomposes subgraph reasoning models into a non-parametric subgraph extractor and an SMPNN, introduces Relational Tree Mover's Distance (RTMD) to measure subgraph differences, defines stability as the inverse Lipschitz constant of the SMPNN w.r.t. RTMD, and derives a PAC-Bayesian generalization bound where the expected risk discrepancy scales with the inverse stability.
Key results
- RTMD-based SVM label classification reaches 0.8205 on WNv3, 0.7739 on FBv1 and 0.8654 on NLv2 (L=3), well above the 0.5 random baseline.
- Across 48 subgraph reasoning models, stability and generalization error are negatively correlated: Pearson -0.5759 (WNv3), -0.5134 (FBv1), -0.4912 (NLv2), all with p<0.01.
- Empirically, max score difference of GraIL grows with RTMD between subgraphs, consistent with the derived Lipschitz bound.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| Use RTMD to classify triplet labels | SVM on WNv3 · WNv3 | classification accuracy: 0.5 -> 0.8204 | Helped |
| Use RTMD to classify triplet labels | SVM on FBv1 · FBv1 | classification accuracy: 0.5 -> 0.7743 | Helped |
| Use RTMD to classify triplet labels | SVM on NLv2 · NLv2 | classification accuracy: 0.5 -> 0.8652 | Helped |
| Increase RTMD depth from 2 to 3 layers (ablation) | SVM label classification · WNv3 | classification accuracy: 0.8204 -> 0.8205 | No clear effect |
| Increase RTMD depth from 2 to 3 layers (ablation) | SVM label classification · FBv1 | classification accuracy: 0.7743 -> 0.7739 | No clear effect |
| Increase RTMD depth from 2 to 3 layers (ablation) | SVM label classification · NLv2 | classification accuracy: 0.8652 -> 0.8654 | No clear effect |
| Increase model stability | Subgraph reasoning models · WNv3 | generalization error: -0.5759 | Helped |
| Increase model stability | Subgraph reasoning models · FBv1 | generalization error: -0.5134 | Helped |
| Increase model stability | Subgraph reasoning models · NLv2 | generalization error: -0.4912 | Helped |
Limitations
- Generalization bound relies on assumptions (label distribution conditional on subgraph, sufficiency of known triplets) and bounded weight norms.
- RTMD is only a pseudo-metric, and the analysis covers only the inductive setting with unseen entities, not unseen relations.
- Empirical validation is limited to three inductive datasets and correlation rather than a causal test.
Experimental setup
Datasets: WN18RR v3 FB15K-237 v1 NELL-995 v2
Benchmarks: WN18RR v3 FB15K-237 v1 NELL-995 v2
Metrics: label classification accuracy Pearson correlation generalization error empirical Lipschitz constant
Baselines: GraIL NBFNet RED-GNN
Builds on: Tree Mover's Distance GraIL NBFNet RED-GNN ReED
Closest papers by meaning
- Context-aware Inductive Knowledge Graph Completion with Latent Type Constraints and Subgraph Reasoning (AAAI 2025 · similarity 0.89)
- S²DN: Learning to Denoise Unconvincing Knowledge for Inductive Knowledge Graph Completion (AAAI 2025 · similarity 0.89)
- Towards Graph Foundation Models: Training on Knowledge Graphs Enables Transferability to General Graphs (NeurIPS 2025 · similarity 0.89)
- Reasoning on Graphs: Faithful and Interpretable Large Language Model Reasoning (ICLR 2024 · similarity 0.88)
- Towards Global-Topology Relation Graph for Inductive Knowledge Graph Completion (AAAI 2025 · similarity 0.88)
- Topology of Reasoning: Understanding Large Reasoning Models through Reasoning Graph Properties (NeurIPS 2025 · similarity 0.88)
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