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GraphSAINT: Graph Sampling Based Inductive Learning Method

ICLR 2020 · Graph learning › GNN architectures · approach: Deep graph convolution and simplification · 328 citations (OpenAlex)

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Measured effects reported in the paper

What was changedWhereMeasuredEffect
Use graph-level Node sampling instead of the layer-sampling baselineGCN minibatch training · PPI, Flickr, Reddit, Yelp, AmazonF1-micro: 0.637 -> 0.960 (PPI); 0.501 -> 0.507 (Flickr); 0.953 -> 0.962 (Reddit); 0.634 -> 0.641 (Yelp); 0.758 -> 0.782 (Amazon)Helped
Use random edge sampling rather than random node samplingGraphSAINT · PPI, Flickr, Reddit, Yelp, AmazonF1-micro: 0.960 -> 0.981 (PPI); 0.507 -> 0.510 (Flickr); 0.962 -> 0.966 (Reddit); 0.641 -> 0.653 (Yelp); 0.782 -> 0.807 (Amazon)Helped
Use random-walk sampling rather than random node samplingGraphSAINT · PPI, Flickr, Reddit, Yelp, AmazonF1-micro: 0.960 -> 0.981 (PPI); 0.507 -> 0.511 (Flickr); 0.962 -> 0.966 (Reddit); 0.641 -> 0.653 (Yelp); 0.782 -> 0.815 (Amazon)Helped
Increase random-walk root count from 250 to 750 (ablation)GraphSAINT-RW · PPIF1-microHelped
Increase random-walk root count beyond 750 (ablation)GraphSAINT-RW · All evaluated datasetsF1-microNo clear effect
Increase JK-GraphSAINT depth from 2 layers to 4 layers (ablation)JK-GraphSAINT with edge sampler · RedditF1-micro: 0.966 -> 0.970Helped
Increase depth of GraphSAGE-minibatch GAT and JK-net from 2 to 4 layers (ablation)GAT-SAGE and JK-SAGE · RedditF1-microHurt
Use graph sampling instead of GraphSAGE layer sampling for 4-layer architecturesGAT and JK-net · Reddittraining speed: two orders of magnitudeHelped
Use GraphSAINT rather than ClusterGCN for the 5-layer PPI modelGCN, 5×2048 · PPI (large version)F1-micro: 0.994 -> 0.995Helped
Use GraphSAINT rather than ClusterGCN for the 4-layer Reddit modelGCN, 4×128 · RedditF1-micro: 0.966 -> 0.970Helped

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