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OpenMIBOOD: Open Medical Imaging Benchmarks for Out-Of-Distribution Detection
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Introduces OpenMIBOOD, a medical imaging OOD detection benchmark with three MIB settings (MIDOG, PhaKIR, OASIS-3) spanning 14 datasets, and evaluates 24 post-hoc OOD methods, finding natural-image rankings do not transfer.
Problem
Existing OOD detection benchmarks (e.g., OpenOOD) are built on natural images and lack medical imaging coverage; they also merge covariate-shifted ID data with ID, conflating OOD detection with generalization.
Approach
Build medical OOD benchmarks with separate cs-ID, near-OOD and far-OOD categories around three ID classification tasks, and evaluate post-hoc OOD detectors to show that natural-image rankings do not carry over to medical data.
Key results
- MDSEns achieves the best average near-OOD AUROC across the three MIBs (ranked first in Table 1), while ViM reaches 80.74 average AUROC on the MIBs versus 72.08 on ImageNet1k.
- Classification-based post-hoc methods perform poorly on medical data; e.g., the average AUROC of classification-based approaches on EndoSeg18 is 33.71.
- Feature-space methods consistently outperform probability/logit-based methods on the medical benchmarks, reversing the trend seen on natural images.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| Use MDSEns instead of ViM | OOD detection on MIDOG · MIDOG near-OOD | AUROC: 62.67 -> 91.84 | Helped |
| Use MDSEns instead of ViM | OOD detection on PhaKIR · PhaKIR near-OOD | AUROC: 81.14 -> 97.11 | Helped |
| Use MDSEns instead of ViM | OOD detection on OASIS-3 · OASIS-3 near-OOD | AUROC: 98.40 -> 99.46 | Helped |
| Apply ViM to medical imaging rather than ImageNet1k | ViM · MIBs and ImageNet1k | AUROC: 72.08 on ImageNet1k; 80.74 on the MIBs | Mixed |
Surprising findings
- Classification-based OOD methods sometimes assign higher confidence to OOD inputs than ID inputs, e.g., mean softmax for Grasper rises from 79.07% (ID) to 94.04% (EndoSeg18 OOD).
- Top-ranked methods on natural-image benchmarks do not transfer; ranking on ImageNet1k differs substantially from medical rankings.
Limitations
- Focuses only on classification tasks; segmentation settings are not covered.
- Evaluates only post-hoc methods without training-based OOD approaches.
- Some datasets are curated via crops and heuristics, which may introduce unintended shifts.
Experimental setup
Datasets: MIDOG CCAgT FNAC 2019 PhaKIR Cholec80 EndoSeg15 EndoSeg18 Kvasir-SEG CATARACTS OASIS-3 ATLAS BraTS
Benchmarks: OpenMIBOOD (MIDOG, PhaKIR, OASIS-3 settings) ImageNet1k (OpenOOD)
Metrics: AUROC FPR@95 AUPR-IN AUPR-OUT F1-score
Baselines: MDS Residual ViM KNN ReAct ODIN EBO MSP
Builds on: OpenOOD OpenOOD v1.5 Full-Spectrum OOD Detection
Closest papers by meaning
- MultiOOD: Scaling Out-of-Distribution Detection for Multiple Modalities (NeurIPS 2024 · similarity 0.88)
- DIsoN: Decentralized Isolation Networks for Out-of-Distribution Detection in Medical Imaging (NeurIPS 2025 · similarity 0.88)
- Image Background Serves as Good Proxy for Out-of-distribution Data (ICLR 2024 · similarity 0.87)
- Rethinking the Evaluation of Out-of-Distribution Detection: A Sorites Paradox (NeurIPS 2024 · similarity 0.87)
- Extremely Simple Multimodal Outlier Synthesis for Out-of-Distribution Detection and Segmentation (NeurIPS 2025 · similarity 0.86)
- ImageNet-OOD: Deciphering Modern Out-of-Distribution Detection Algorithms (ICLR 2024 · similarity 0.86)
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