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ProtGNN: Towards Self-Explaining Graph Neural Networks

AAAI 2022 · Graph learning › GNN architectures · approach: GNN explainability · 116 citations (OpenAlex)

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Measured effects reported in the paper

What was changedWhereMeasuredEffect
Add prototype learning to GCNGCN · BBBPaccuracy (%): 84.6$\pm 3.4$ -> 89.4$\mathbf{\pm 4.1}$Helped
Add prototype learning to GCNGCN · Graph-SST2accuracy (%): 89.7$\pm 0.5$ -> 89.9$\mathbf{\pm 2.4}$No clear effect
Add prototype learning to GCNGCN · Graph-Twitteraccuracy (%): 67.5$\pm 1.9$ -> 68.9$\mathbf{\pm 5.9}$No clear effect
Add prototype learning to GCNGCN · BA-Shapeaccuracy (%): 91.9$\pm 1.7$ -> 95.7$\mathbf{\pm 1.4}$Helped
Add conditional subgraph sampling to ProtGNNGCN ProtGNN · BBBPaccuracy (%): 89.4$\mathbf{\pm 4.1}$ -> 88.0$\pm 4.6$No clear effect
Use conditional subgraph sampling instead of MCTS for ProtGNN+ samplingProtGNN+ · BBBPtraining time: $\textgreater$ 2 hrs -> 632.7 sHelped
Add prototype projection with MCTSGCN · BBBPtraining time: 177.9 s -> 506.3 sHurt
Vary prototypes per class; increasing the number beyond 5 (ablation)ProtGNN · BBBP and Graph-TwitteraccuracyHelped
Remove diversity loss (ablation)ProtGNN · BBBPprototype diversityHurt
Add diversity loss (ablation)ProtGNN · BBBPprototype diversityHelped
Vary cluster and separation loss weights; use $\lambda_1 = 0.10$ and $\lambda_2 = 0.05$ (ablation)ProtGNN · BBBPaccuracyHelped

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