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Selective Nonlinearities Removal from Digital Signals
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Trains two U-Net-inspired networks that take 2D amplitude stacks of Fourier transforms (under quadratic/cubic phase-correction factors) and output nonlinearity-free Fourier amplitudes, removing either second-order or third-order nonlinearity from OCT-style signals selectively.
Problem
Fourier-transform-based signals (OCT, MRI, FTS) are distorted by second- and third-order nonlinearities in the modulation, broadening or distorting peaks and degrading image resolution; existing linearisation removes all orders together and cannot isolate one order.
Approach
Build a 32x1024 stack of Fourier amplitudes of the signal multiplied by different quadratic (or cubic) phase factors, then train a U-Net-style network (with max-pooling to 1D output) to stitch the nonlinearity-free regions into a Fourier amplitude free of only that nonlinearity order.
Key results
- Both networks reach mean GoF of 99.98% at a 1% error threshold on the synthetic test set.
- At a 0.1% error threshold, 9.52% (Network #1) and 3.07% (Network #2) of test predictions fall below 95% GoF.
- On experimental OCT data, Network #1 sharpens peaks comparably to traditional linearisation, with a higher peak in the mirror test; inference takes 39 ms per stack on a Quadro RTX 6000 GPU.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| Remove second-order nonlinearity while preserving third-order nonlinearity | Network #1 · Synthetic test dataset | GoF (1% error threshold): 99.98% | Helped |
| Remove third-order nonlinearity while preserving second-order nonlinearity | Network #2 · Synthetic test dataset | GoF (1% error threshold): 99.98% | Helped |
| Use Network #1 to remove second-order nonlinearity | OCT mirror signals at different depths · Mirror at 11 different depths | Peak width | Helped |
| Use Network #2 to remove third-order nonlinearity | OCT mirror signals at different depths · Mirror at 11 different depths | Peak elongation | Helped |
| Use Network #1 instead of traditional linearisation | OCT mirror signals · Mirror at different depths | Peak shape | Helped |
| Use Network #1 to remove second-order nonlinearity | OCT signals · Sapphire glass | Image quality | Helped |
| Use Network #2 to remove third-order nonlinearity | OCT signals · Sapphire glass | Image quality | No clear effect |
| Use Network #1 instead of traditional linearisation | OCT signals · Grape and cucumber | Image quality | Mixed |
| Use traditional linearisation instead of Network #1 | OCT signals · Mirror at different depths | Peak shape | Hurt |
Surprising findings
- Network #1 output retains a third-order 'tail' at depth, which traditional linearisation removes, suggesting the traditional method is not perfect.
- Network #2 gave no visually significant improvement on the glass and biological data because third-order nonlinearity there is very small.
Limitations
- Predictions produce small non-zero values where ground truth is exactly zero, lowering GoF.
- Trained predominantly on high signal-to-noise signals, so low-SNR cucumber data loses detail.
- Processing speed is insufficient for real-time OCT imaging.
Experimental setup
Datasets: computer-generated Gaussian-shaped OCT-like signals with 2-12 interfaces experimental OCT data of mirror, sapphire glass, grape and cucumber
Benchmarks: held-out synthetic test set of 14,993 objects experimental OCT mirror, glass, grape, cucumber data
Metrics: Goodness-of-Fit Approximity (GoF) mean absolute error
Baselines: traditional OCT linearisation method [1] machine learning nonlinearity removal [9]
Builds on: U-Net Optuna
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