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Simultaneously Linking Entities and Extracting Relations from Biomedical Text without Mention-Level Supervision

AAAI 2020 · Large language models › Language, safety and interpretability · approach: Data and evaluation methodology · 7 citations (OpenAlex)

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Measured effects reported in the paper

What was changedWhereMeasuredEffect
jointly infer entity links and relations instead of using hard external entity linksSNERL vs BRAN (Linker) · Full CTD testF1: 30.5 -> 42.2Helped
jointly infer entity links and relations instead of using hard external entity linksSNERL vs BRAN (Linker) · Disease-phenotype testF1: 8.3 -> 11.8Helped
jointly infer entity links and relations instead of using hard external entity linksSNERL vs BRAN (Linker) · BRAN-filtered CTD testF1: 49.4 -> 49.7No clear effect
learn entity linking jointly rather than select the top string-match candidateSNERL · CDR document-level entity linkingF1: 82.7 -> 86.6Helped
allow selection from the top 25 candidates rather than only the top candidateentity-relation tuple prediction on CTD development set · CTD development settuple recall: 67.0% -> 80.0%Helped

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