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Harnessing Language Model for Cross-Heterogeneity Graph Knowledge Transfer
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Proposes LMCH, which serializes heterogeneous graphs into metapath-based text corpora, fine-tunes DistilBERT on source HGs, then iteratively co-trains it with an RGCN predictor plus LM-GNN contrastive alignment for cross-heterogeneity few-shot node classification.
Problem
Few-shot node classification in heterogeneous graphs where source and target graphs have different node and edge types (cross-heterogeneity transfer), with label sparsity in the target graph.
Approach
Unify heterogeneous graphs of different schemas as metapath-based natural-language corpora so a pretrained language model can automatically learn transferable general knowledge from source HGs, instead of relying on hand-defined relation patterns; then iteratively exchange soft labels between the LM and a GNN on the target HG and align them with contrastive loss.
Key results
- LMCH outperforms the best baseline by an average of 5.16% accuracy and 6.22% Macro-F1 across 32 settings on four datasets.
- In a 3-way 3-shot DBLP setting, LMCH reaches 92.31% accuracy, above CGFL's 90.26% (2-way 3-shot) and 57.45% (3-way 3-shot on YELP-like column; table layout ambiguous).
- Ablation: removing metapath corpora (LMCH-V1) drops DBLP 3-way 3-shot accuracy to 84.88% from 92.31%.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| Use LMCH instead of CGFL | Cross-heterogeneity few-shot node classification · DBLP 3-way 3-shot | accuracy: 85.72 -> 92.31 | Helped |
| Use LMCH instead of CGFL | Cross-heterogeneity few-shot node classification · IMDB 3-way 3-shot | accuracy: 41.81 -> 44.92 | Helped |
| Use LMCH instead of CGFL | Cross-heterogeneity few-shot node classification · YELP 3-way 3-shot | accuracy: 49.04 -> 49.72 | Helped |
| Use LMCH instead of CGFL | Cross-heterogeneity few-shot node classification · PubMed 3-way 3-shot | accuracy: 42.04 -> 44.62 | Helped |
| Add metapath-based corpus construction rather than using node attributes only (ablation) | LMCH · DBLP 3-way 3-shot | accuracy: 83.31 -> 92.31 | Helped |
| Add metapath-based corpus construction rather than using node attributes only (ablation) | LMCH · IMDB 3-way 3-shot | accuracy: 42.86 -> 44.92 | Helped |
| Add advance LM fine-tuning before GNN-supervised LM fine-tuning (ablation) | LMCH · DBLP 3-way 3-shot | accuracy: 90.93 -> 92.31 | Helped |
| Add advance LM fine-tuning before GNN-supervised LM fine-tuning (ablation) | LMCH · IMDB 3-way 3-shot | accuracy: 44.64 -> 44.92 | Helped |
| Add GNN supervision to target LM fine-tuning (ablation) | LMCH · DBLP 3-way 3-shot | accuracy: 88.43 -> 92.31 | Helped |
| Add GNN supervision to target LM fine-tuning (ablation) | LMCH · IMDB 3-way 3-shot | accuracy: 34.94 -> 44.92 | Helped |
| Add LM-GNN contrastive alignment (ablation) | LMCH · DBLP 3-way 3-shot | accuracy: 91.45 -> 92.31 | Helped |
| Add LM-GNN contrastive alignment (ablation) | LMCH · IMDB 3-way 3-shot | accuracy: 40.09 -> 44.92 | Helped |
Surprising findings
- Node-attribute-only corpora perform much worse on IMDB (36.11% accuracy) than metapath corpora (44.92%), while the best-second method differs by dataset (random-walk on DBLP, first-order neighbors on IMDB).
Limitations
- Relies on a relatively small LM (DistilBERT); larger LLMs left for future work
- Gains depend on dataset: performance varies with corpus construction and whether datasets depend on local or long-range structure
- Experiments limited to four benchmark datasets and N-way K-shot node classification
Experimental setup
Datasets: IMDB DBLP YELP PubMed
Benchmarks: IMDB DBLP YELP PubMed
Metrics: accuracy Macro-F1
Baselines: GCN GAT RGCN HAN MAML ProtoNet GPN G-Meta GLEM LMBot CGFL
Builds on: CGFL GLEM LMBot RGCN DistilBERT
Closest papers by meaning
- HeterSEED: Semantics–Structure Decoupling for Heterogeneous Graph Learning under Heterophily (NeurIPS 2026 · similarity 0.89)
- Bootstrapping Heterogeneous Graph Representation Learning via Large Language Models: A Generalized Approach (AAAI 2025 · similarity 0.89)
- Heterogeneous Graph Neural Network on Semantic Tree (AAAI 2025 · similarity 0.88)
- Contrastive Auxiliary Learning with Structure Transformation for Heterogeneous Graphs (AAAI 2025 · similarity 0.87)
- Multi-Domain Graph Foundation Models: Robust Knowledge Transfer via Topology Alignment (ICML 2025 · similarity 0.87)
- Towards Graph Foundation Models: Learning Generalities Across Graphs via Task-Trees (ICML 2025 · similarity 0.87)
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