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CORTEG: Foundation Models Enable Cross-Modality Representation Transfer from Scalp to Intracranial Brain Recordings
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Adapts the scalp-EEG foundation model ST-EEGFormer to intracranial ECoG decoding via a KNNSoftFourier electrode-coordinate adapter, dual-stream LFS/HGA tokenizer, and LoRA with leave-one-subject-out fine-tuning.
Problem
ECoG decoders are small and subject-specific because per-patient data is scarce, and it is unclear whether large scalp-EEG foundation models can transfer to ECoG despite mismatches in electrode geometry, spectrum, and data availability.
Approach
Map subject-specific ECoG electrode coordinates into a frozen pretrained EEG channel-embedding codebook using a soft kNN-kernel attention branch plus a zero-initialized Fourier residual branch, feed a dual-stream (low-frequency and high-gamma) tokenizer into the EEG ViT, adapt the last layers with LoRA, and calibrate a new patient via leave-one-subject-out fine-tuning of the adapter, LoRA, and hea
Key results
- Pooled CORTEG reaches mean Pearson r=0.554 on the finger task vs DeepFingerNet 0.542 and HiLoFuseNet 0.534, not statistically significant (p=0.65 vs DeepFingerNet).
- On the audio envelope task, pooled CORTEG reaches r=0.339 vs CNN-LSTM 0.261, significant after Bonferroni correction.
- LOO-FT with LoRA reaches r=0.551 (finger) and 0.331 (audio), close to pooled training, and calibrates a new patient in 10-30 minutes on a single GPU with 297K trainable parameters.
Surprising findings
- Scaling the backbone from Small to Base or Large did not improve performance significantly (Base 0.583 vs Small 0.577 in HPC sweep; Large slightly lower).
- Random-initialized backbone reaches 0.510 on finger, close to pretrained 0.554, while pretraining matters much more on audio (0.156 vs 0.339).
Limitations
- Finger-task improvement over strongest baselines is not statistically significant on n=9 subjects.
- Shared MNI-space electrode adapter cannot fully exploit subject-specific anatomy or functional organization.
- No cross-task transfer evaluated and no scaling law observed with backbone size.
Experimental setup
Datasets: Stanford fingerflex ECoG private audio-envelope ECoG scalp EEG pretraining corpus (ST-EEGFormer)
Benchmarks: Stanford fingerflex private audio envelope ECoG
Metrics: Pearson correlation paired Wilcoxon test participation ratio
Baselines: Ridge regression PLS HOPLS LSTM CNN-LSTM DeepFingerNet HiLoFuseNet LaBraM CBraMod MantisV2
Builds on: ST-EEGFormer LoRA Fourier feature positional encoding Nadaraya-Watson kernel regression
Closest papers by meaning
- CSBrain: A Cross-scale Spatiotemporal Brain Foundation Model for EEG Decoding (NeurIPS 2025 · similarity 0.87)
- Neural decoding from stereotactic EEG: accounting for electrode variability across subjects (NeurIPS 2024 · similarity 0.87)
- NeuroAtlas: Benchmarking Foundation Models for Clinical EEG and Brain-Computer Interfaces (NeurIPS 2026 · similarity 0.87)
- NeurIPT: Foundation Model for Neural Interfaces (NeurIPS 2025 · similarity 0.86)
- CBraMod: A Criss-Cross Brain Foundation Model for EEG Decoding (ICLR 2025 · similarity 0.86)
- What do EEG Foundation Models Capture from Human Brain Signals? (NeurIPS 2026 · similarity 0.86)
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