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Graph Neural Networks Can (Often) Count Substructures

ICLR 2025 · Graph learning › GNN architectures · approach: Substructure-aware GNN expressivity

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Shows that message passing GNNs can often count substructures despite known expressivity limits, by analyzing when substructure counts are determinable from node or graph representations.

Problem

Message passing GNNs have limited expressive power and are commonly thought unable to detect or count arbitrary graph substructures (subgraph isomorphism), which matters for many graph tasks.

Approach

Observes that GNNs are in fact often able to count substructures in practice, challenging the common belief that their expressivity limits preclude substructure counting.

Surprising findings

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