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Multi-dataset Joint Pre-training of Emotional EEG Enables Generalizable Affective Computing
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Proposes mdJPT, a task-specific multi-dataset joint pre-training framework for EEG emotion recognition using a covariance-based cross-dataset alignment loss, contrastive inter-subject alignment, and a hybrid MLLA + spatiotemporal encoder.
Problem
Generic EEG foundation models underperform on emotion recognition due to task-feature mismatch and dilution; cross-dataset emotion EEG suffers from distribution shifts, inconsistent emotion label definitions, montage differences, and inter-subject variability, and existing methods need per-subject f
Approach
Jointly pre-train on multiple emotion EEG datasets without emotion labels, using a cross-dataset covariance centroid alignment loss (CDA) plus a temporally aligned contrastive inter-subject alignment loss (ISA), with an MLLA channel encoder followed by a spatiotemporal dynamics model.
Key results
- Few-shot leave-one-dataset-out: mdJPT averages 56.22% accuracy and 79.96 AUROC, reported as 4.57% AUROC above the best baseline (MMM 75.39).
- Zero-shot: mdJPT reaches 72.47% on SEED and 73.34% on DEAP, averaging about 11.9% accuracy improvement over the next-best method.
- Scaling with pre-training datasets on SEED-V target: multi-dataset joint pre-training gives an 8.55% gain over the best single-dataset setting.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| Use mdJPT instead of the strongest listed baseline, MMM | Cross-dataset few-shot evaluation · Cross-dataset few-shot, average | accuracy: 54.54 -> 56.22 | Helped |
| Use mdJPT instead of the strongest listed baseline, MMM | Cross-dataset few-shot evaluation · Cross-dataset few-shot, average | AUROC: 75.39 -> 79.96 | Helped |
| Use mdJPT instead of the strongest listed baseline | Zero-shot evaluation · SEED, SEED-IV, SEED-V, SEED-VII, DEAP, and FACED | accuracy: 72.47 vs 55.42; 50.59 vs 46.86; 52.91 vs 43.32; 33.26 vs 23.58; 73.34 vs 67.04; 17.44 vs 11.64 | Helped |
| Use multiple pre-training datasets rather than the best single-dataset setting | mdJPT · SEED-V few-shot | accuracy: 8.55% | Helped |
| Add CDA loss with a small positive factor rather than factor 0 (ablation) | mdJPT · SEED-V few-shot | accuracy: 63.52 -> 64.98 | Helped |
| Set CDA loss factor to 0.020 (ablation) | mdJPT · SEED-V few-shot | accuracy: 63.52 -> 65.02 | Helped |
| Increase CDA loss factor beyond 0.020 (ablation) | mdJPT · SEED-V few-shot | accuracy: 65.02 -> 64.70; 64.10; 64.08 | Hurt |
| Add ISA loss (ablation) | mdJPT · SEED-V few-shot | accuracy: 30.51 ± 1.16 -> 62.35 ± 4.10 | Helped |
| Use MLLA instead of a vanilla Transformer channel encoder (ablation) | mdJPT · SEED-V few-shot | accuracy: 59.90 ± 1.32 -> 62.35 ± 4.10 | Helped |
| Use spatiotemporal dynamics model instead of a Transformer layer (ablation) | mdJPT · SEED-V few-shot | accuracy: 63.63 ± 0.96 -> 65.02 ± 0.98 | Helped |
| Use ISA loss instead of supervised contrastive learning (ablation) | mdJPT · SEED-V few-shot | accuracy: 47.99 ± 2.51 -> 65.02 ± 0.98 | Helped |
| Align positive samples temporally (ablation) | mdJPT · SEED-V few-shot | accuracy: 55.47 ± 1.71 -> 65.02 ± 0.98 | Helped |
Surprising findings
- Removing the ISA loss drops SEED-V accuracy to 30.51%, below the DE baseline.
- Supervised contrastive learning with emotion labels (47.99%) performs far worse than the label-free ISA loss (65.02%) on SEED-V.
Limitations
- Performance on the nine-class FACED task remains unsatisfactory, with residual distribution shift.
- Evaluation focuses on video-induced emotion; imagery-induced transfer on EmoEEG-MC is low (20.56% accuracy).
- Does not model individual differences in emotional experience and is limited by demographic diversity of datasets.
Experimental setup
Datasets: SEED SEED-IV SEED-V SEED-VII FACED DEAP EmoEEG-MC
Benchmarks: SEED SEED-IV SEED-V SEED-VII FACED DEAP EmoEEG-MC
Metrics: accuracy precision recall F1 score AUROC
Baselines: MMM LaBraM EEGPT DE baseline Transformer Supervised CL MK-MMD loss
Builds on: Mamba-like linear attention (MLLA) SupCon LaBraM EEGPT
Closest papers by meaning
- DMMR: Cross-Subject Domain Generalization for EEG-Based Emotion Recognition via Denoising Mixed Mutual Reconstruction (AAAI 2024 · similarity 0.90)
- FEEL: Quantifying Heterogeneity in Physiological Signals for Generalizable Emotion Recognition (NeurIPS 2025 · similarity 0.87)
- EEVR: A Dataset of Paired Physiological Signals and Textual Descriptions for Joint Emotion Representation Learning (NeurIPS 2024 · similarity 0.87)
- Multi-to-Single: Reducing Multimodal Dependency in Emotion Recognition Through Contrastive Learning (AAAI 2025 · similarity 0.86)
- Beyond Mimicking Under-Represented Emotions: Deep Data Augmentation with Emotional Subspace Constraints for EEG-Based Emotion Recognition (AAAI 2024 · similarity 0.85)
- REVE: A Foundation Model for EEG - Adapting to Any Setup with Large-Scale Pretraining on 25,000 Subjects (NeurIPS 2025 · similarity 0.85)
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