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Wavy Transformer

NeurIPS 2025 · Architectures and efficiency › Attention and transformers · approach: Transformer block and depth design · 0 citations (OpenAlex)

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Shows attention-layer dynamics equal graph neural diffusion on a complete graph and proposes Wavy Transformer, a second-order wave-equation attention residual (plus velocity-aware LN/FFN) that mitigates over-smoothing across NLP, CV, and sparse-graph tasks.

Problem

Deep transformers suffer from over-smoothing (token representations converge across layers); the paper asks whether this can be understood via dissipative diffusion dynamics and mitigated with an intrinsic wave-based mechanism.

Approach

Interpret stacked attention residual updates as graph diffusion on a complete graph, then replace the first-order diffusive residual with a second-order wave (momentum) update, adding velocity-specific LayerNorm and FFN so the state-velocity relation is preserved under the chain rule.

Key results

Measured effects reported in the paper

What was changedWhereMeasuredEffect
Mix diffusion with Full Wave residualBERT-like pretraining model · BERT validationPPL: 31.76 -> 29.00Helped
Use Full Wave residual instead of diffusionBERT-like pretraining model · BERT validationPPL: 31.76 -> 31.99Hurt
Mix diffusion with Light Wave residualBERT-like model · GLUE averagescore: 64.13 -> 66.12 (+1.99)Helped
Mix diffusion with Light Wave residualBERT-like model · GLUE STS-Bscore: 52.11 -> 64.76Helped
Add Light Wave residualDeiT-Ti · ImageNet-1K valTop-1 accuracy: +0.92Helped
Add Full Wave residualCaiT-XXS-24 · ImageNet-1KTop-1 accuracy: +1.0Helped
Add Light Wave residualDIFFormer · OGBN-Arxiv, 7 layersaccuracy: 24.44 ± 4.51 -> 66.73 ± 0.33 (+42.29)Helped
Add Light Wave residualDIFFormer · OGBN-Proteins, 5 layersROC-AUC: 69.42 ± 2.31 -> 80.14 ± 0.67 (+10.72)Helped
Add Light Wave residualDIFFormer · Cora, 20 layers, τ=0.2accuracy: 39.92 ± 5.14 -> 85.18 ± 0.48 (+45.26)Helped
Remove velocity FFN (ablation)Full Wave DeiT-Tiny · ImageNet-1K val, 150 epochsTop-1 accuracy: 68.92 -> 68.39 (--0.53)Hurt
Replace Diffusion with Light Wave residualDIFFormer · OGBN-Arxiv, 3 layersaccuracy: 68.77 ± 0.28 -> 66.68 ± 0.66 (-2.09)Hurt
Add Light Wave residualDIFFormer · OGBN-Arxiv, 5 layersaccuracy: 61.72 ± 1.11 -> 67.06 ± 0.03 (+5.34)Helped

Surprising findings

Limitations

Experimental setup

Datasets: Wikipedia BookCorpus GLUE SQuAD ImageNet-1K OGBN-Arxiv OGBN-Proteins Cora Citeseer PubMed OpenWebText

Benchmarks: GLUE ImageNet-1K OGBN-Arxiv OGBN-Proteins Cora Citeseer PubMed SQuAD

Metrics: perplexity MLM accuracy GLUE score top-1 accuracy ROC-AUC cosine similarity spectral gap throughput

Baselines: Diffusion (standard residual) DeiT-Ti DeiT-Ti + FeatScale CaiT-XXS-24 DIFFormer BERT

Builds on: graph neural diffusion DIFFormer DeiT BERT FeatScale

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