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FAME: Adaptive Functional Attention with Expert Routing for Function-on-Function Regression

NeurIPS 2025 · Probabilistic and scientific modeling › Molecules and proteins · approach: Sparse concepts and hypothesis testing · 0 citations (OpenAlex)

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Proposes FAME, an end-to-end function-on-function regression model combining bidirectional neural CDEs with a mixture-of-experts vector field, multi-head cross attention across input functions, and a neural CDE decoder, evaluated on synthetic GP data and three real datasets.

Problem

Function-on-function regression with irregularly and non-uniformly sampled input and output functions, where existing methods rely on fixed bases, kernels, or discretized grids and handle feature heterogeneity poorly.

Approach

Continuous attention is built from a bidirectional NCDE whose vector field is a router-weighted mixture of K experts, followed by cross attention across functions and an NCDE decoder that can be evaluated at arbitrary query points, giving sampling-invariant, Lipschitz-stable operator learning.

Key results

Measured effects reported in the paper

What was changedWhereMeasuredEffect
add bidirectional attention (ablation)FAME · Synthetic Case 1, N=200MSE: 0.0812 -> 0.0783Helped
add MoE (ablation)FAME · Synthetic Case 1, N=200MSE: 0.0828 -> 0.0783Helped
add cross-attention (ablation)FAME · Synthetic Case 1, N=200MSE: 0.0815 -> 0.0783Helped
add MoE routing under feature heterogeneity (ablation)FAME · Synthetic Case 4 (feature heterogeneity)MSE: 0.0842 -> 0.0798Helped
increase expert count from 1 toward 3–5 (ablation)FAME · Synthetic Case 8, d=10, heterogeneous featuresMSEHelped
increase expert count beyond 3–5 (ablation)FAME · Synthetic Case 8, d=10, heterogeneous featuresMSENo clear effect

Surprising findings

Limitations

Experimental setup

Datasets: Gaussian process synthetic functions Hawaii Ocean Human3.6M ETT-small

Benchmarks: Gaussian process synthetic benchmark (Cases 1-8) Hawaii Ocean Human3.6M ETT-small

Metrics: mean squared error training time inference time peak memory

Baselines: B-spline basis expansion Fourier basis expansion FPCA Kernel Method (operator-valued kernel) Gaussian Process FNN

Builds on: neural controlled differential equations Transformer multi-head attention mixture of experts

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