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EddyFormer: Accelerated Neural Simulations of Three-Dimensional Turbulence at Scale

NeurIPS 2025 · Probabilistic and scientific modeling › Dynamical systems · approach: Physics-informed dynamics learning · 0 citations (OpenAlex)

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Proposes EddyFormer, a spectral-element Transformer with LES-style SGS and LES streams that corrects a coarse pseudo-spectral DNS to DNS-level accuracy for 3D and 2D turbulence, with a 30x speedup and evaluation on The Well.

Problem

Accurate and efficient simulation of multi-scale turbulent flows; existing neural operators and Transformers struggle to scale to large 3D turbulence and often fail to converge on diverse turbulent flows.

Approach

Tokenizes flow with spectral-element bases into coarse elements (SEM tokens), splits it into an LES stream (attention over SEM tokens for global structure, with spectral cutoff filter) and an SGS stream (local SEM-based spectral convolutions), with rotary positional encoding and an attention mask for domain generalization.

Key results

Measured effects reported in the paper

What was changedWhereMeasuredEffect
Use EddyFormer instead of F-FNO for direct one-step prediction3D homogeneous isotropic turbulence · 3D homogeneous isotropic turbulenceone-step relative error: 22.5% -> 8.52%Helped
Use EddyFormer (Legendre) instead of DNS 256³3D homogeneous isotropic turbulence · 3D homogeneous isotropic turbulence, t = 5relative L2 error: 16.3% -> 18.2%Hurt
Use EddyFormer (Legendre) instead of DNS 256³3D homogeneous isotropic turbulence · 3D homogeneous isotropic turbulence, t = 5inference time: 152s -> 4.86sHelped
Use EddyFormer instead of F-FNOKolmogorov flow · Kolmogorov flow test set, t = 10relative L2 error: 5.28 -> 2.61Helped
Use EddyFormer instead of F-FNOKolmogorov flow · Kolmogorov flow test set, t = 20point-wise correlation: 0.20 -> 0.27Helped
Use EddyFormer instead of F-FNOKolmogorov flow · Kolmogorov flow test settime-averaged total kinetic energy, [45, 50]: 1.511 -> 1.670Mixed
Use EddyFormer instead of CNextU-netThe Well · MHD_64VRMSE: 0.1633 -> 0.1160Helped
Use EddyFormer instead of CNextU-netThe Well · shear_flowVRMSE: 0.8080 -> 0.0837Helped
Use EddyFormer instead of CNextU-netThe Well · rayleigh_benardVRMSE: 0.6699 -> 0.1854Helped
Use EddyFormer instead of FNOThe Well · rayleigh_taylor_instab.VRMSE: >10 -> 0.1115Helped
Use Legendre rather than Chebyshev basis (ablation)EddyFormer · 3D homogeneous isotropic turbulenceone-step relative error: 8.61% -> 8.52%Helped
Use Legendre rather than Chebyshev basis (ablation)EddyFormer · The WellVRMSE: MHD_64: 0.1160 -> 0.1240; shear_flow: 0.1123 -> 0.0837; rayleigh_benard: 0.2527 -> 0.1854; rayleigh_taylor_instab.: 0.11Mixed

Surprising findings

Limitations

Experimental setup

Datasets: The Well Homogeneous isotropic turbulence dataset (generated) Kolmogorov flow dataset (generated)

Benchmarks: The Well (MHD_64, shear_flow, rayleigh_benard, rayleigh_taylor_instability) 3D homogeneous isotropic turbulence 2D Kolmogorov flow

Metrics: relative L2 error VRMSE point-wise correlation energy spectrum structure function Q-criterion kinetic energy conservation inference time

Baselines: ResNet TF-Net FNO F-FNO GNOT AViT U-net CNextU-net T-FNO DNS 96^3 DNS 256^3

Builds on: Fourier neural operator spectral element method large-eddy simulation rotary position encoding The Well

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