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MedChain: Bridging the Gap Between LLM Agents and Clinical Practice with Interactive Sequence
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Introduces MedChain, a 12,163-case Chinese clinical workflow benchmark with five sequential interactive stages, and MedChain-Agent, a multi-agent system with feedback and a case-retrieval RAG module that outperforms baselines.
Problem
LLM agents are evaluated on medical licensing-style QA, which misses personalization, interactivity, and sequential dependencies of real clinical decision-making across the full care workflow.
Approach
A sequential, interactive clinical benchmark (specialty referral, history-taking with a simulated patient, examination/report generation, diagnosis, treatment) paired with a multi-agent framework that adds cross-stage feedback and a MedCase-RAG retrieving similar cases via 12-dimensional structured case representations.
Key results
- MedChain-Agent (InternVL2-8B backbone) reaches average 0.5200 on MedChain, versus 0.4262 for the best base LLM (Claude-3.5-sonnet) and 0.4704 for single-agent RAG.
- Applying the framework lifts InternVL2 average by 13.41 points and GPT-4o-mini by 8.70 points on MedChain.
- On MedQA, PubMedQA, PathVQA and MedBullets, MedChain-Agent achieves the highest average (0.576) among the compared agent methods.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| add Feedback to MedChain-Agent without Feedback or MedCase-RAG (ablation) | MedChain-Agent on MedChain · MedChain | Average: 0.4341 -> 0.4692 | Helped |
| add MedCase-RAG to MedChain-Agent without Feedback or MedCase-RAG (ablation) | MedChain-Agent on MedChain · MedChain | Average: 0.4341 -> 0.5140 | Helped |
| add both Feedback and MedCase-RAG (ablation) | MedChain-Agent on MedChain · MedChain | Average: 0.4341 -> 0.5200 | Helped |
| add detailed patient profiles (ablation) | MedChain-Agent · MedChain Diagnosis | Score: 0.4159 -> 0.4802 | Helped |
| add detailed patient profiles (ablation) | MedChain-Agent · MedChain Treatment | Score: 0.4310 -> 0.4613 | Helped |
| retain sequential dependency between stages (ablation) | MedChain-Agent · MedChain Diagnosis | Score: 0.4807 -> 0.4802 | Hurt |
| retain sequential dependency between stages (ablation) | MedChain-Agent · MedChain Treatment | Score: 0.4743 -> 0.4613 | Hurt |
| require interactive information gathering (ablation) | MedChain-Agent · MedChain Diagnosis | Score: 0.4634 -> 0.4802 | Helped |
| require interactive information gathering (ablation) | MedChain-Agent · MedChain Treatment | Score: 0.5207 -> 0.4613 | Hurt |
| apply MedChain-Agent instead of MDAgents | InternVL2-based agents · Other diagnosis benchmarks | Average: 0.546 -> 0.576 | Helped |
Surprising findings
- Removing sequential dependency (using ground-truth previous-stage outputs) improved most models' diagnosis scores, indicating error propagation makes the task harder.
- Multi-agent baselines such as MDAgent and MedAgent often underperform single-agent RAG and even base models on MedChain.
Limitations
- Data comes from a single Chinese website (iiYi) with imbalanced specialty distribution.
- Patient responses during history-taking are simulated by Gemma2-9B, which may not reflect real patient variability.
- Dataset and code are promised only upon acceptance, not released with the submission.
Experimental setup
Datasets: iiYi clinical cases (12,163 EHRs) MedQA PubMedQA PathVQA MedBullets
Benchmarks: MedChain MedQA PubMedQA PathVQA MedBullets
Metrics: accuracy IoU claim recall five-level diagnosis score average score
Baselines: GPT-4o-mini Claude-3.5-sonnet MedGemma LLaVA Qwen2 InternVL2 Baichuan HuaTuoGPT MedReason FineMedLM-o1 CoT Self-consistency
Builds on: MedAgents MDAgents AutoGen DyLAN DocLens
Closest papers by meaning
- MDAgents: An Adaptive Collaboration of LLMs for Medical Decision-Making (NeurIPS 2024 · similarity 0.89)
- MedJourney: Benchmark and Evaluation of Large Language Models over Patient Clinical Journey (NeurIPS 2024 · similarity 0.89)
- MedAgentBoard: Benchmarking Multi-Agent Collaboration with Conventional Methods for Diverse Medical Tasks (NeurIPS 2025 · similarity 0.88)
- MedExAgent: Training LLM Agents to Ask, Examine, and Diagnose in Noisy Clinical Environments (NeurIPS 2026 · similarity 0.88)
- MTBBench: A Multimodal Sequential Clinical Decision-Making Benchmark in Oncology (NeurIPS 2025 · similarity 0.88)
- PhysicianBench: Evaluating LLM Agents in Real-World EHR Environments (NeurIPS 2026 · similarity 0.88)
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