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Projecting Assumptions: The Duality Between Sparse Autoencoders and Concept Geometry

NeurIPS 2025 · Probabilistic and scientific modeling › Molecules and proteins · approach: Neuro-symbolic probabilistic layers · 1 citations (OpenAlex)

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Frames sparse autoencoders (ReLU, JumpReLU, TopK) as projection-based bilevel optimization, shows each implicitly assumes a data geometry, and proposes SpaDE, a simplex-projection prototype-distance SAE that handles nonlinear separability and heterogeneous intrinsic dimension.

Problem

Sparse autoencoders are assumed to uncover all concepts a model uses, but their architectures may implicitly bias them toward certain concept geometries, so different SAEs can find different concepts.

Approach

SAE encoders are orthogonal projections onto architecture-specific constraint sets, which induce receptive fields and implicit assumptions about concept geometry (linear separability, uniform intrinsic dimension). Designing an SAE whose projection set (probability simplex over Euclidean distances to prototypes) matches these properties recovers concepts other SAEs miss.

Key results

Measured effects reported in the paper

What was changedWhereMeasuredEffect
Use SpaDE instead of ReLU or JumpReLUSAE concept discovery · Synthetic Gaussian clusters, nonlinear conceptF1: ~0.5 -> 1.0Helped
Use ReLU or JumpReLU instead of SpaDESAE concept discovery · Synthetic Gaussian clusters, linearly separable conceptF1: 1 -> 1No clear effect
Use SpaDE rather than ReLU or JumpReLUSAE concept discovery · English PCFG, parts of speechF1Helped
Use TopK with fixed sparsity KSAE reconstruction · Synthetic Gaussian clusters, heterogeneous concept dimensionsnormalized MSE: below 20%Hurt
Set TopK sparsity k to 8 for the 6-dimensional conceptTopK SAE · Synthetic Gaussian clusters, 6-dimensional conceptnormalized MSE: below the dashed line only after k=8Helped
Use SpaDE rather than ReLU, JumpReLU, or TopKSAE concept specialization · DINOv2-base activations on ImagenetteF1Helped

Surprising findings

Limitations

Experimental setup

Datasets: synthetic Gaussian clusters PCFG formal language strings Imagenette

Benchmarks: Imagenette

Metrics: F1 score of top monosemantic latents normalized MSE L0 sparsity latent co-occurrence cosine similarity

Baselines: ReLU SAE JumpReLU SAE TopK SAE BatchTopK SAE

Builds on: sparse dictionary learning TopK SAE JumpReLU SAE K-Deep Simplex sparsemax

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