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Adjusted Count Quantification Learning on Graphs
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Extends Adjusted Classify & Count to graph quantification via structural importance sampling (SIS) for covariate shift and neighborhood-aware ACC (NACC) for non-homophilic edges, evaluated on synthetic and Twitch shifts.
Problem
Quantification learning (estimating label prevalences) on graph-structured data, where prior probability shift assumed by ACC often fails due to structural sampling biases and non-homophilic edges hurt class identifiability.
Approach
Reweight training vertices via kernel density ratios (PPR-based structural kernel) so the confusion matrix matches the test distribution under covariate shift (SIS), and augment the predicted-label space with the majority predicted label of each vertex's neighbors so the confusion profiles become identifiable (NACC).
Key results
- On synthetic shifts, SIS and NACC improve quantification over ACC/PACC under PPS and covariate shift, with SIS or SIS+NACC ranking best on average across classifiers and shift types.
- On Twitch Gamers, SIS generally outperforms standard ACC and CC for non-English language communities when using an APPNP classifier, but not for English (74% of training data).
- Using a structure-unaware MLP classifier, SIS did not significantly improve quantification on Twitch, highlighting the need for an accurate base classifier.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| Use SIS importance weighting with the structural PPR kernel | ACC-based graph quantification · Synthetic graph shifts (PPS, BFS, and random walks) | AE | Helped |
| Add neighborhood-aware predictions to the quantifier (NACC) | ACC-based graph quantification · Synthetic graph shifts | AE | Helped |
| Use SIS with APPNP rather than standard ACC/CC | APPNP quantification · Twitch Gamers, German, French, Spanish, and Russian communities | AE | Helped |
| Use SIS rather than standard quantification approaches | Graph quantification · Twitch Gamers, English community | AE | Hurt |
| Use SIS with a structure-unaware MLP classifier | MLP quantification · Twitch Gamers | AE | No clear effect |
| Replace the structural PPR kernel with an inner-product feature kernel (ablation) | SIS · Synthetic structural covariate shifts | AE | Hurt |
| Use an interpolated PPR kernel with λ < 1 rather than λ = 1 (ablation) | SIS with NACC · CoraML and CiteSeer | AE | Helped |
| Use an interpolated PPR kernel with λ < 1 rather than λ = 1 (ablation) | SIS with NACC · Amazon Photos and Amazon Computers | AE | Hurt |
| Increase γ in the shortest-path kernel (ablation) | SIS with NACC · Synthetic PPS shifts | AE | Hurt |
| Increase γ in the shortest-path kernel (ablation) | SIS with NACC · Synthetic BFS and random-walk covariate shifts | AE | Helped |
| Replace the PPR kernel with the shortest-path kernel (ablation) | SIS · Synthetic shifts | AE | Mixed |
| Use the PPR kernel rather than the shortest-path kernel (ablation) | SIS · Synthetic shifts overall | AE | Helped |
Surprising findings
- The naive neighborhood-based ENQ performs worst among classifiers, while APPNP performs best, and SIS can perform worse than standard methods on the English partition where the shift is small.
Limitations
- No true graph quantification benchmark exists; synthetic shifts were introduced into node classification datasets.
- SIS requires a kernel suited to the sampling process; PPR kernel is a default that may not match other shifts (e.g., BFS shift is only approximately captured).
Experimental setup
Datasets: CoraML CiteSeer PubMed Amazon Photos Amazon Computers Twitch Gamers
Benchmarks: CoraML CiteSeer PubMed Amazon Photos Amazon Computers Twitch Gamers
Metrics: absolute error (AE) relative absolute error (RAE)
Baselines: MLPE CC PCC ACC PACC ENQ
Builds on: Adjusted Classify & Count APPNP QuaPy Ensemble neighborhood quantification (ENQ)
Closest papers by meaning
- Unveiling the sampling density in non-uniform geometric graphs (ICLR 2023 · similarity 0.86)
- No Metric to Rule Them All: Toward Principled Evaluations of Graph-Learning Datasets (ICML 2025 · similarity 0.85)
- Fully-inductive Node Classification on Arbitrary Graphs (ICLR 2025 · similarity 0.84)
- Learning Graph Representation via Graph Entropy Maximization (ICML 2024 · similarity 0.84)
- Distribution Learning Meets Graph Structure Sampling (NeurIPS 2025 · similarity 0.84)
- Equivariance Everywhere All At Once: A Recipe for Graph Foundation Models (NeurIPS 2025 · similarity 0.84)
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