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The Implicit Bias of Structured State Space Models Can Be Poisoned With Clean Labels
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Shows theoretically and empirically that adding a single cleanly labeled sequence with large trailing elements to an SSM's training set can distort gradient-flow implicit bias and destroy length generalization (clean-label poisoning).
Problem
Prior work showed gradient flow over SSMs implicitly finds generalizing solutions with a low-dimensional teacher when training on infinite Gaussian data; it is unknown whether this holds for finite training sets, where cleanly labeled examples might disrupt generalization.
Approach
Derives a dynamical characterization of gradient flow over SSM diagonal state matrices showing greedy low-rank learning is impeded when training sequences have large trailing elements; uses this with a non-resonance linearization theorem to prove that adding one cleanly labeled sequence with large last elements causes non-generalization, and extends the phenomenon empirically to S4, Mamba-2, and L
Key results
- In the single-example teacher-student setting, adding one cleanly labeled sequence with large trailing elements raises normalized generalization error from 1.27e-3 to 5.01e-2 (SSM) and 1.64e-3 to 5.45e-2 (SSM in MLP network).
- On sequential CIFAR-10, clean-label poisoned examples increase test loss for S4 from 0.739 to 0.839, Mamba-2 from 1.005 to 1.178, and LRU from 0.892 to 1.111.
- Accuracy drops with poisoning: S4 78.8% to 76.9%, Mamba-2 77.8% to 75.1%, LRU 72.4% to 68.3%.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| Add special cleanly labeled sequences | SSM · Teacher-student setting per theorem | generalization error: $1.27\times 10^{-3}$ -> $5.01\times 10^{-2}$ | Hurt |
| Add special cleanly labeled sequences | Standalone SSM · Standalone SSM beyond theorem | generalization error: $0.194$ -> $16.62$ | Hurt |
| Add special cleanly labeled sequences | SSM in non-linear neural network · SSM in non-linear neural network | generalization error: $1.64\times 10^{-3}$ -> $5.45\times 10^{-2}$ | Hurt |
| Add cleanly labeled poisonous examples | S4 · CIFAR-10 test set | cross-entropy loss: $0.739$ -> $0.839$ | Hurt |
| Add cleanly labeled poisonous examples | S4 · CIFAR-10 test set | classification accuracy: $78.8\%$ -> $76.9\%$ | Hurt |
| Add cleanly labeled poisonous examples | Mamba-2 · CIFAR-10 test set | cross-entropy loss: $1.005$ -> $1.178$ | Hurt |
| Add cleanly labeled poisonous examples | Mamba-2 · CIFAR-10 test set | classification accuracy: $77.8\%$ -> $75.1\%$ | Hurt |
| Add cleanly labeled poisonous examples | LRU · CIFAR-10 test set | cross-entropy loss: $0.892$ -> $1.111$ | Hurt |
| Add cleanly labeled poisonous examples | LRU · CIFAR-10 test set | classification accuracy: $72.4\%$ -> $68.3\%$ | Hurt |
Surprising findings
- Adding cleanly labeled, teacher-consistent examples can destroy length generalization that was otherwise attained by implicit bias.
- Standalone SSM beyond the theory setting shows generalization error rising from 0.194 to 16.62 with special sequences.
Limitations
- Theory covers a restricted setting (near-zero initialization, diagonal A, fixed B and C, single-example base training set).
- Guarantees hold for open sets of initializations that may have small volume.
- Experiments use near-zero initialization and small scale, not modern SSM initializations.
Experimental setup
Datasets: CIFAR-10 (sequential variant) synthetic teacher-labeled sequences
Benchmarks: CIFAR-10 (sequential)
Metrics: generalization error over sequence length (impulse response) cross-entropy loss classification accuracy
Baselines: S4 Mamba-2 LRU
Builds on: implicit bias of SSMs (Cohen-Karlik et al.) greedy low rank learning gradient matching for poisoning non-resonance linearization theorem
Closest papers by meaning
- Understanding Nonlinear Implicit Bias via Region Counts in Input Space (ICML 2025 · similarity 0.87)
- Feature Contamination: Neural Networks Learn Uncorrelated Features and Fail to Generalize (ICML 2024 · similarity 0.87)
- Weak-to-Strong Generalization Even in Random Feature Networks, Provably (ICML 2025 · similarity 0.85)
- Understanding Domain Generalization: A Noise Robustness Perspective (ICLR 2024 · similarity 0.85)
- Initial Guessing Bias: How Untrained Networks Favor Some Classes (ICML 2024 · similarity 0.85)
- Tuning Frequency Bias of State Space Models (ICLR 2025 · similarity 0.85)
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