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Enhancing Feature Diversity Boosts Channel-Adaptive Vision Transformers
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Proposes DiChaViT, a channel-adaptive ViT for multi-channel imaging that adds diverse channel sampling, channel and token diversification losses, and orthogonal initialization to reduce feature redundancy across channels.
Problem
Channel-adaptive vision transformers for multi-channel imaging learn redundant features across channels when trained with random channel masking, hurting robustness and channel-specific feature learning under varying channel configurations at test time.
Approach
Replace uniform random channel sampling with diversity-aware sampling that picks channels dissimilar to an anchor channel, and add a proxy-NCA-style channel diversification loss on channel tokens plus an orthogonality-based token diversification loss on patch tokens, with orthogonal initialization.
Key results
- DiChaViT reaches 69.19% full-channel accuracy on JUMP-CP vs 67.51% for ChannelViT, and 63.36% on So2Sat vs 61.03%.
- On CHAMMI average score, DiChaViT achieves 69.66 vs 64.90 for ChannelViT.
- Removing DCS drops JUMP-CP partial-channel accuracy from 57.98 to 42.37 and So2Sat partial from 47.76 to 17.88.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| add CDL (ablation) | DiChaViT · CHAMMI | Avg score: 68.07 -> 69.66 | Helped |
| add TDL (ablation) | DiChaViT · CHAMMI | Avg score: 67.61 -> 69.66 | Helped |
| add DCS (ablation) | DiChaViT · So2Sat Partial | accuracy: 17.88 -> 47.76 | Helped |
| add DCS (ablation) | DiChaViT · JUMP-CP Partial | accuracy: 42.37 -> 57.98 | Helped |
| use both same-channel and different-channel terms in TDL rather than only the same-channel term (ablation) | DiChaViT · CHAMMI | Avg score: 65.47 -> 69.66 | Helped |
| use both same-channel and different-channel terms in TDL rather than only the different-channel term (ablation) | DiChaViT · So2Sat | accuracy: 62.50 -> 63.36 | Helped |
| compute DCS similarity using channel tokens instead of patch tokens (ablation) | DiChaViT · CHAMMI | Avg score: 65.57 -> 69.68 | Helped |
| set DCS temperature to 0.1 rather than ≈ 0 (ablation) | DiChaViT · So2Sat | accuracy: 62.51 -> 63.36 | Helped |
| set DCS temperature to 0.1 rather than 0.2 (ablation) | DiChaViT · So2Sat | accuracy: 61.92 -> 63.36 | Helped |
| add channel tokens (ablation) | DiChaViT · JUMP-CP | accuracy: +8.0% | Helped |
| use orthogonal initialization (ablation) | DiChaViT · JUMP-CP and CHAMMI | accuracy: +1.0% | Helped |
| use a value of λ_CDL that is too large (ablation) | DiChaViT · So2Sat and CHAMMI | accuracy | Hurt |
Surprising findings
- Always sampling the least similar channels (temperature near zero) performs worse than moderate temperature sampling, so maximal dissimilarity is not optimal.
- Patch-token-based similarity for DCS underperforms channel-token-based similarity.
Limitations
- Cannot handle novel channels unseen during training.
- Requires extra hyperparameter tuning and compute.
- Evaluated only on three datasets with a small ViT-S backbone.
Experimental setup
Datasets: CHAMMI JUMP-CP So2Sat
Benchmarks: CHAMMI JUMP-CP So2Sat
Metrics: top-1 accuracy macro F1-score (1-NN, CHAMMI)
Baselines: ChannelViT ChAda-ViT DepthwiseViT TemplateMixingViT HyperNetViT
Builds on: ChannelViT Hierarchical Channel Sampling ProxyNCA++ DINOv2 ChAda-ViT
Closest papers by meaning
- Channel Vision Transformers: An Image Is Worth 1 x 16 x 16 Words (ICLR 2024 · similarity 0.91)
- DC-ViT: Modulating Spatial and Channel Interactions for Multi-Channel Images (NeurIPS 2026 · similarity 0.90)
- ChA-MAEViT: Unifying Channel-Aware Masked Autoencoders and Multi-Channel Vision Transformers for Improved Cross-Channel Learning (NeurIPS 2025 · similarity 0.89)
- ChAda-ViT : Channel Adaptive Attention for Joint Representation Learning of Heterogeneous Microscopy Images (CVPR 2024 · similarity 0.87)
- Linearly Decomposing and Recomposing Vision Transformers for Diverse-Scale Models (NeurIPS 2024 · similarity 0.85)
- Linear Differential Vision Transformer: Learning Visual Contrasts via Pairwise Differentials (NeurIPS 2025 · similarity 0.84)
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