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Subgraph Neural Networks

NeurIPS 2020 · Graph learning › GNN architectures · approach: Graph structure learning · 60 citations (OpenAlex)

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Measured effects reported in the paper

What was changedWhereMeasuredEffect
Use subgraph-level message passing with property-aware channels rather than baseline subgraph representationsSubgraph classification · synthetic datasetsMicro-F1: SubGNN 0.919\std{0.016} vs strongest baseline 0.803\std{0.039} on density; 0.629\std{0.039} vs 0.423\std{0.057} on cut rHelped
Use SubGNN with GIN node embeddingsSubgraph classification · ppi-bpMicro-F1: 0.398\std{0.058} -> 0.599\std{0.024}Helped
Use SubGNN with GraphSAINT node embeddingsSubgraph classification · hpo-neuroMicro-F1: 0.535\std{0.032} -> 0.644\std{0.019}Helped
Use SubGNN with GIN node embeddingsSubgraph classification · hpo-metabMicro-F1: 0.452\std{0.025} -> 0.537\std{0.023}Helped
Use SubGNN with GraphSAINT node embeddings instead of the strongest baselineSubgraph classification · em-userMicro-F1: 0.859\std{0.014} -> 0.816\std{0.040}Hurt
Use only the structure channel instead of the full channel combination (ablation)SubGNN · densityMicro-F1: 0.894\std{0.025} -> 0.919\std{0.016}Helped
Use only the structure channel instead of the full channel combination (ablation)SubGNN · cut ratioMicro-F1: 0.458\std{0.101} -> 0.629\std{0.039}Helped
Use only the structure channel instead of the full channel combination (ablation)SubGNN · corenessMicro-F1: 0.659\std{0.092} -> 0.663\std{0.058}No clear effect
Use only the position channel instead of the full channel combination (ablation)SubGNN · componentMicro-F1: 0.726\std{0.120} -> 0.958\std{0.098}Helped
Replace sum readout with attention over component representations (ablation)SubGNN · subgraph classificationperformanceNo clear effect

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