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Research map / Probabilistic and scientific modeling / Molecules and proteins

Precision-Recall Balanced Topic Modelling

NeurIPS 2019 · Probabilistic and scientific modeling › Molecules and proteins · approach: Probabilistic embeddings and relational inference · 7 citations (OpenAlex)

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Measured effects reported in the paper

What was changedWhereMeasuredEffect
increase lambda from 0 (LDA) to 0.1 to weight precision as well as recalltopic model · NYTIMESmean precision: -78.8 -> -72.7Helped
increase lambda from 0 (LDA) to 0.1topic model · NYTIMESmean recall: -2.97 -> -3.61Hurt
increase lambda from 0 (LDA) to 0.1topic model · NYTIMEStopic coherence@5: -23.1 -> -16Helped
increase lambda from 0 (LDA) to 0.1topic model · NYTIMESL1 distance: 1.74 -> 1.63Helped
increase lambda from 0 (LDA) to 0.1topic model · 20NEWSGROUPARI: 0.15 -> 0.209Helped
increase lambda from 0 (LDA) to 0.1topic model · NYTIMEStopic entropy: 5.85 -> 4.78Helped
increase lambda from 0 (LDA) to 0.1topic model · 20NEWSGROUPR@10 (%): 9.85 -> 8.92Hurt
use fixed empirical distribution (lambda mixture) instead of SW document-specific learned distributionstopic model · NYTIMESmean precision: -79.3 -> -72.7Helped
tune LDA alpha and gamma priors to trade off recall and precision (ablation)LDA · all datasetsprecision and coherenceNo clear effect
use asymmetric topic prior instead of symmetric (ablation)LDA · all datasetsprecisionNo clear effect
add shared background distribution to SW model (SWB) (ablation)SW model · NYTIMEStopic qualityNo clear effect
increase lambda from 0 on crime data (K=5) (ablation)spatio-temporal topic model · London crimePEI and PAIHelped

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