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Efficient Nonparametric Tensor Decomposition for Binary and Count Data
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Proposes ENTED, a nonparametric Gaussian-process tensor decomposition for binary and count tensors that uses Pólya-Gamma augmentation for conjugate natural-gradient SVI and sparse orthogonal inducing points.
Problem
Tensor completion for binary and count data is hard because traditional tensor decompositions rely on Gaussian likelihoods and predefined multilinear structures (CP/Tucker), and GP-based tensor models cannot handle discrete observations or scale stochastically.
Approach
Replace multilinear contractions with a GP, use Pólya-Gamma augmentation to obtain conjugate updates for Bernoulli and negative binomial likelihoods, and combine sparse orthogonally decoupled inducing points (SOLVE) with stochastic natural-gradient variational inference.
Key results
- On binary tensor completion, ENTED achieves the best AUC on Digg, Enron and DBLP (e.g., 0.767 AUC at rank 10 on Digg vs. 0.737 for GPTF).
- On count tensor completion, ENTED obtains the lowest RMSE on JHU, Article and EMS across ranks, with NLL around 1.35 on Article versus 1.63 for VBGCP.
- ENTED converges faster than GPTF thanks to natural-gradient updates, and is faster per epoch than GPTF and GPTF-PG when many inducing points are used.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| Replace GPTF's Probit binary likelihood with ENTED's PG-augmented Bernoulli model and SOLVE inference | GPTF · Binary tensor completion, Digg and DBLP | AUC: 0.737 $\pm$ 0.017 -> 0.767 $\pm$ 0.032; 0.954 $\pm$ 0.002 -> 0.962 $\pm$ 0.002 | Helped |
| Replace GPTF's Probit binary likelihood with ENTED's PG-augmented Bernoulli model and SOLVE inference | GPTF · Binary tensor completion, Enron | AUC: 0.950 $\pm$ 0.013 -> 0.950 $\pm$ 0.013 | No clear effect |
| Use ENTED's PG-augmented Bernoulli model and SOLVE inference instead of GPTF | GPTF · Binary tensor completion, Enron and DBLP | NLL: 0.349 $\pm$ 0.038 -> 0.309 $\pm$ 0.063; 0.339 $\pm$ 0.010 -> 0.250 $\pm$ 0.007 | Helped |
| Use ENTED's NB count model and nonlinear GP tensor structure instead of GPTF's Gaussian likelihood | GPTF · Count tensor completion, JHU, Article, and EMS | RMSE: 0.546 $\pm$ 0.014 -> 0.406 $\pm$ 0.042; 0.655 $\pm$ 0.027 -> 0.636 $\pm$ 0.024; 0.403 $\pm$ 0.060 -> 0.301 $\pm$ 0.045 | Helped |
| Use ENTED's NB count model instead of VBGCP | VBGCP · Count tensor completion, JHU, Article, and EMS | NLL: 69.0 $\pm$ 0.5 -> 3.67 $\pm$ 0.07; 1.63 $\pm$ 0.01 -> 1.35 $\pm$ 0.01; 22.5 $\pm$ 1.8 -> 2.91 $\pm$ 0.04 | Helped |
| Use ENTED instead of VBGCP | VBGCP · JHU, rank 10 | MAPE: 0.286 $\pm$ 0.024 -> 0.292 $\pm$ 0.037 | Hurt |
| Increase the inducing-point count (ablation) | GPTF · Article, rank 10 | RMSE | Hurt |
| Increase the inducing-point count (ablation) | GPTF-PG and ENTED · Article, rank 10 | RMSE | Helped |
| Use ENTED's decoupled sparse orthogonal inducing points instead of GPTF and GPTF-PG inference (ablation) | GPTF and GPTF-PG · Article, rank 10 | epoch computing time | Mixed |
Surprising findings
- CoSTCo, a nonlinear CNN-based tensor model, performs poorly on the sparse binary tensors, which the authors attribute to overfitting and to the probability tensor not being low-rank.
Limitations
- NB shape hyper-parameter zeta is fixed to 20 for all datasets rather than tuned or learned.
- Slower than GPTF and GPTF-PG when the number of inducing points is small because natural gradients are implemented manually.
Experimental setup
Datasets: Digg Enron DBLP JHU Covid-19 Article (DeskDrop) EMS Montgomery County
Benchmarks: Digg Enron DBLP JHU Article EMS
Metrics: AUC NLL RMSE MAPE
Baselines: GCP BCP SBTR GPTF CoSTCo NCPD BPCP VB-GCP MDTF GPTF-PG
Builds on: GPTF (Gaussian process tensor factorization) Pólya-Gamma augmentation SOLVE-GP (sparse orthogonal variational GP) sparse variational Gaussian process scalable Bayesian tensor ring (SBTR)
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