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DeepBranchTracer: A Generally-Applicable Approach to Curvilinear Structure Reconstruction Using Multi-Feature Learning

AAAI 2024 · 3D vision › 3D generation · approach: Learning 3D reconstruction from images · 4 citations (OpenAlex)

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Introduces DeepBranchTracer, a U-Net-based network (CSFL) predicting centerline, boundary, direction and radius maps plus a multi-feature iterative tracing strategy (MFT) for 2D and 3D curvilinear structure reconstruction.

Problem

Reconstructing curvilinear structures (roads, vessels, neuron branches) from images is hard due to complex topology, adjacent/tangled branches and ambiguous evidence; segmentation methods merge adjacent branches and reconstruction methods rely on hand-crafted geometric models.

Approach

Formulates curvilinear extraction as geometric attribute estimation (direction, radius) learned by a deep network with LSTM sequence modules, combined with centerline and boundary image features in an iterative local tracing procedure that needs no hand-crafted tubular/ray models.

Key results

Measured effects reported in the paper

What was changedWhereMeasuredEffect
Add geometric features to centerline-only tracing (ablation)DeepBranchTracer on fMOST-VTA · fMOST-VTAABL: 128.65 -> 167.51Helped
Add the LSTM sequence learning module to geometric-only tracing (ablation)DeepBranchTracer on fMOST-VTA · fMOST-VTAABL: 48.07 -> 57.04Helped
Add image and geometric features with LSTM instead of centerline features only (ablation)DeepBranchTracer on fMOST-VTA · fMOST-VTASSD-F1: 0.845 -> 0.910Helped
Use centerline-only tracing instead of geometric-only tracing (ablation)DeepBranchTracer on fMOST-VTA · fMOST-VTAPE: 1.879 -> 0.835Helped
Add geometry features to centerline-only tracing without LSTM (ablation)DeepBranchTracer on fMOST-VTA · fMOST-VTALength-F1: 0.893 -> 0.890No clear effect
Use DeepBranchTracer rather than V-NetCurvilinear structure reconstruction · Massachusetts Roads DatasetLength-F1: 0.803 -> 0.816Helped
Use DeepBranchTracer rather than FR-NetCurvilinear structure reconstruction · DRIVESSD-F1: 0.857 -> 0.893Helped
Use DeepBranchTracer rather than FR-NetCurvilinear structure reconstruction · DRIVELength-F1: 0.831 -> 0.828Hurt
Use DeepBranchTracer rather than FR-NetCurvilinear structure reconstruction · CHASE_DB1Length-F1: 0.829 -> 0.845Helped
Use DeepBranchTracer rather than neuTube+V-NetCurvilinear structure reconstruction · fMOST-VTAABL: 216.3 -> 198.3Hurt
Use DeepBranchTracer rather than SPECurvilinear structure reconstruction · DIADEM-CCFSSD-F1: 0.379 -> 0.421Helped

Surprising findings

Limitations

Experimental setup

Datasets: Massachusetts Roads Dataset DRIVE CHASE_DB1 DIADEM-CCF fMOST-VTA

Benchmarks: Massachusetts Roads Dataset DRIVE CHASE_DB1 fMOST-VTA DIADEM-CCF

Metrics: SSD-F1 Precision Recall Length-F1 ABL PE RE

Baselines: U-Net V-Net AU-Net CS-Net RCNN-UNet SGCN RoadTracer Vec-road FR-Net SA-Net neuTube MOST

Builds on: U-Net RoadTracer SPE

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