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Attribute-Missing Graph Clustering Network
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Proposes AMGC, a unified alternating clustering-and-imputation framework for deep graph clustering on attribute-missing graphs, using cluster-oriented imputation and a dual non-contrastive clustering loss.
Problem
Deep clustering on graphs where only a subset of nodes has complete attributes; existing two-stage impute-then-cluster methods decouple imputation from clustering and are not designed for clustering.
Approach
Alternates between a clustering step (K-means on EMA-encoded graph embeddings) and an imputation step where K-nearest neighbors within the same predicted cluster fill missing attributes, while a dual non-contrastive cluster-center loss (ProPos-inspired) separates clusters and an edge reconstruction loss trains the imputation encoder.
Key results
- On Co.CS, AMGC reaches 72.61% ACC, outperforming AGC-DRR and CCGC by 13.53% and 7.73% ACC.
- AMGC outperforms SAT, SVGA, and ITR by up to 31.04% ACC on Cora and 25.01% on Pubmed.
- On Co.Physics, most baselines run out of memory while AMGC achieves 77.68% ACC.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| add the dual non-contrastive clustering loss (ablation) | AMGC · Cora | ACC: 57.17 -> 66.65 | Helped |
| add the cluster-oriented imputation scheme (ablation) | AMGC · Cora | ACC: 63.72 -> 66.65 | Helped |
| add the dual non-contrastive clustering loss (ablation) | AMGC · Citeseer | ACC: 53.90 -> 60.92 | Helped |
| add the cluster-oriented imputation scheme (ablation) | AMGC · Citeseer | ACC: 57.08 -> 60.92 | Helped |
| add the dual non-contrastive clustering loss (ablation) | AMGC · Pubmed | ACC: 43.02 -> 64.56 | Helped |
| add the cluster-oriented imputation scheme (ablation) | AMGC · Pubmed | ACC: 62.51 -> 64.56 | Helped |
| add the dual non-contrastive clustering loss (ablation) | AMGC · Co.CS | ACC: 56.44 -> 72.61 | Helped |
| add the cluster-oriented imputation scheme (ablation) | AMGC · Co.CS | ACC: 70.18 -> 72.61 | Helped |
| add the dual non-contrastive clustering loss (ablation) | AMGC · Co.Physics | ACC: 73.15 -> 77.68 | Helped |
| add the cluster-oriented imputation scheme (ablation) | AMGC · Co.Physics | ACC: 75.95 -> 77.68 | Helped |
Surprising findings
- SVGA shows more stable clustering results than AMGC on some datasets, which the authors attribute to its Gaussian latent assumption.
Limitations
- Experiments assume a fixed 40% attribute-complete split; the imputation relies on K-means cluster quality.
- Only five datasets evaluated; baselines are mostly attribute-complete methods adapted to the setting.
Experimental setup
Datasets: Cora Citeseer Pubmed Coauthor CS Coauthor Physics
Benchmarks: Cora Citeseer Pubmed Coauthor CS Coauthor Physics
Metrics: ACC NMI ARI F1
Baselines: SDCN GDCL AGCN AGC-DRR HSAN CCGC IMKAM DIMVC SAT SVGA ITR
Builds on: SDCN ProPos BGRL SAT ITR
Closest papers by meaning
- Adaptive Feature Propagation for Attribute-Missing Graph Clustering (NeurIPS 2026 · similarity 0.93)
- Attribute-Missing Multi-view Graph Clustering (CVPR 2025 · similarity 0.92)
- Adaptive Feature Imputation with Latent Graph for Deep Incomplete Multi-View Clustering (AAAI 2024 · similarity 0.90)
- Scalable Attribute-Missing Graph Clustering via Neighborhood Differentiation (ICML 2025 · similarity 0.89)
- DGCLUSTER: A Neural Framework for Attributed Graph Clustering via Modularity Maximization (AAAI 2024 · similarity 0.86)
- Propagate and Inject: Revisiting Propagation-Based Feature Imputation for Graphs with Partially Observed Features (ICML 2025 · similarity 0.86)
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