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CAMIL: Context-Aware Multiple Instance Learning for Cancer Detection and Subtyping in Whole Slide Images

ICLR 2024 · Detection and segmentation › CNN features · approach: Domain-specific segmentation and detection · 2 citations (OpenAlex)

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Proposes CAMIL, a transformer-based MIL model whose attention is constrained by a neighbor-similarity mask over WSI tiles, to improve WSI cancer detection and subtyping.

Problem

Attention-based MIL models for whole slide image classification ignore contextual and spatial relationships among neighboring tiles, causing misclassification of sparse tumor regions and noisy instances.

Approach

Builds a neighbor-constrained attention module in which each tile's attention is recalibrated by summing its 8-neighbors' query-key scores weighted by a feature-similarity mask from a frozen SimCLR encoder, and combines it with a Nystromformer global transformer branch and gated local/global fusion.

Key results

Measured effects reported in the paper

What was changedWhereMeasuredEffect
add neighbor-constrained attention to CAMIL-G (ablation)CAMIL · CAMELYON16ACC: 0.891 -> 0.917Helped
add neighbor-constrained attention to CAMIL-G (ablation)CAMIL · CAMELYON16AUC: 0.950 -> 0.959Helped
add Nystromformer to CAMIL-L (ablation)CAMIL · CAMELYON16ACC: 0.910 -> 0.917Helped
add Nystromformer to CAMIL-L (ablation)CAMIL · CAMELYON16AUC: 0.953 -> 0.959Helped
add neighbor-constrained attention to CAMIL-G (ablation)CAMIL · TCGA-NSCLCACC: 0.907 -> 0.916Helped
add neighbor-constrained attention to CAMIL-G (ablation)CAMIL · TCGA-NSCLCAUC: 0.973 -> 0.975Helped
add Nystromformer to CAMIL-L (ablation)CAMIL · TCGA-NSCLCACC: 0.914 -> 0.916Helped
add Nystromformer to CAMIL-L (ablation)CAMIL · TCGA-NSCLCAUC: 0.975 -> 0.975No clear effect
add neighbor-constrained attention to CAMIL-G (ablation)CAMIL · CAMELYON17ACC: 0.818 -> 0.843Helped
add neighbor-constrained attention to CAMIL-G (ablation)CAMIL · CAMELYON17AUC: 0.875 -> 0.881Helped
add Nystromformer to CAMIL-L (ablation)CAMIL · CAMELYON17ACC: 0.828 -> 0.843Helped
replace ImageNet-pretrained ResNet-18 with SimCLR-pretrained feature extractor (ablation)CAMIL · CAMELYON16ACCHelped

Surprising findings

Limitations

Experimental setup

Datasets: CAMELYON16 CAMELYON17 TCGA-NSCLC

Benchmarks: CAMELYON16 TCGA-NSCLC CAMELYON17

Metrics: AUC accuracy F1 Dice specificity

Baselines: CLAM-SB CLAM-MB TransMIL DTFD-MIL DSMIL GTP

Builds on: attention-based MIL Nystromformer SimCLR TransMIL CLAM

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