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Harnessing Explanations: LLM-to-LM Interpreter for Enhanced Text-Attributed Graph Representation Learning
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Proposes TAPE, which prompts an LLM (GPT-3.5, Llama2) for ranked predictions and explanations on text-attributed graph nodes, fine-tunes a small LM (DeBERTa) to turn the explanations into node features, and trains GNNs on the averaged predictions from these features.
Problem
Node classification on text-attributed graphs (TAGs) where shallow text features are weak and LM-based pipelines are costly, and where LLMs accessed only via text APIs (LMaaS) cannot be fine-tuned or expose logits.
Approach
Use LLM-generated textual explanations and ranked predictions as an intermediate medium: a small LM "interpreter" fine-tuned on those explanations converts them into frozen node features for any downstream GNN, avoiding LM-GNN iterative training and requiring only text-level LLM access.
Key results
- On ogbn-arxiv, TAPE with RevGAT reaches 77.50% test accuracy, the best reported, versus 76.57% for GLEM-G-Step style baselines' top figure in the table (GLEM-G-Step 76.57%).
- TAPE training on ogbn-arxiv takes 3.76 min for the GNN step versus 9.18h for GLEM, reported as a 2.88x speedup over GLEM.
- On tape-arxiv23 (post-GPT-3.5 cutoff), TAPE with RevGAT reaches 84.23% versus 73.56% for zero-shot GPT-3.5.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| Add explanation and prediction features alongside original-text features (ablation) | RevGAT on ogbn-arxiv · ogbn-arxiv test | accuracy: 0.7504 ± 0.0020 -> 0.7750 ± 0.0012 | Helped |
| Add original-text and prediction features alongside explanation features (ablation) | RevGAT on ogbn-arxiv · ogbn-arxiv test | accuracy: 0.7529 ± 0.0052 -> 0.7750 ± 0.0012 | Helped |
| Add original-text and explanation features alongside prediction features (ablation) | RevGAT on ogbn-arxiv · ogbn-arxiv test | accuracy: 0.7519 ± 0.0031 -> 0.7750 ± 0.0012 | Helped |
| Use Llama2-13b-chat instead of GPT-3.5 to generate predictions and explanations | TAPE with RevGAT · ogbn-arxiv | accuracy: 0.7750 ± 0.0012 -> 0.7619 ± 0.0027 | Hurt |
| Move the paper title before the abstract in the prompt (ablation) | GPT-3.5 zero-shot classification · ogbn-arxiv | accuracy: 0.720 -> 0.695 | Hurt |
| Instruct the LLM to focus only on content in the actual text (ablation) | GPT-3.5 zero-shot classification · ogbn-arxiv | accuracy: 0.720 -> 0.695 | Hurt |
| Request step-by-step categorization reasoning in the prompt (ablation) | GPT-3.5 zero-shot classification · ogbn-arxiv | accuracy: 0.720 -> 0.705 | Hurt |
| Use TAPE's decoupled training instead of GLEM's iterative training | DeBERTa-base + RevGAT on ogbn-arxiv · ogbn-arxiv | total training time: 9.18h -> 3.76min; 2.88× speedup | Helped |
Surprising findings
- Llama-2-13b-chat zero-shot explanations give 76.19% on ogbn-arxiv when used through TAPE, close to GPT-3.5's 77.50%, despite much lower zero-shot accuracy (44.23%).
Limitations
- Requires manually crafted, dataset-specific prompts whose quality affects performance.
- LLM querying cost and time for large graphs (about $128 and about 9 hours for ogbn-arxiv via API).
- ogbn-products evaluated only on a sampled subgraph due to compute budget.
Experimental setup
Datasets: Cora PubMed ogbn-arxiv ogbn-products tape-arxiv23
Benchmarks: Cora PubMed ogbn-arxiv ogbn-products tape-arxiv23
Metrics: accuracy
Baselines: GCN GraphSAGE RevGAT MLP GIANT LM finetune (DeBERTa) GLEM zero-shot GPT-3.5
Builds on: GLEM DeBERTa RevGAT GIANT
Closest papers by meaning
- Generalization Principles for Inference over Text-Attributed Graphs with Large Language Models (ICML 2025 · similarity 0.91)
- Label-free Node Classification on Graphs with Large Language Models (LLMs) (ICLR 2024 · similarity 0.91)
- Leveraging Large Language Models for Node Generation in Few-Shot Learning on Text-Attributed Graphs (AAAI 2025 · similarity 0.90)
- SSTAG: Structure-Aware Self-Supervised Learning Method for Text-Attributed Graphs (NeurIPS 2025 · similarity 0.89)
- LLM Enhancers for GNNs: An Analysis from the Perspective of Causal Mechanism Identification (ICML 2025 · similarity 0.89)
- TGLsta: Low-resource Textual Graph Learning with Semantic and Topological Awareness via LLMs (AAAI 2025 · similarity 0.88)
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