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Enhancing Instance-Level Image Classification with Set-Level Labels
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Proposes FACILE, which pretrains instance feature maps on set-level coarse-grained labels (via set-input models) and then fine-tunes fine-grained classifiers on few-shot support sets, with a theoretical fast-rate excess-risk analysis and experiments on CIFAR-100, histopathology (TCGA/GTEx pretraining; LC, PAIP, NCT, PDAC), CUB200 and DINO V2/CLIP backbones.
Problem
Instance-level image classification usually relies on single-instance labels, which are expensive to obtain; the paper asks whether cheaper set-level coarse-grained labels over sets of instances can improve fine-grained few-shot classification.
Approach
Learn an instance feature map by training a set-input model (e.g., Set Transformer) to predict set-level coarse labels from sets of instance embeddings, then freeze the feature map and train a fine-grained classifier on few-shot support sets; the framework is generic and instantiated with FSP and SupCon pretraining, with a theory giving fast O(1/n) excess-risk rates under a relative Lipschitz assu
Key results
- On 5-shot 5-way LC test, FACILE-FSP reaches 90.67 F1 (NC) versus 85.12 for the best self-supervised baseline SimSiam, with roughly 13% gain over the strongest baseline on NCT-pretrained comparisons as stated.
- On CIFAR-100 5-shot 5-way with unique superclass-number pretraining, FACILE-FSP attains 86.25 F1 versus 78.15 for SimSiam.
- Excess risk theorem gives O(1/n) fast rate when m = Omega(n^2) under a 1/sqrt(m) coarse-label rate; experiments show log-linear error trends consistent with this.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| Pretrain on input sets using coarse-grained unique-superclass-number labels rather than self-supervised SimSiam | FACILE-FSP vs. SimSiam · CIFAR-100 unique superclass number, 5-shot 5-way | F1: 79.44 -> 86.25 | Helped |
| Pretrain on input sets using coarse-grained most-frequent-superclass labels rather than instance-level set labels | FACILE-FSP vs. FSP-Patch · LC, 5-shot 5-way, LR | F1: 84.10 -> 89.18 | Helped |
| Use set-level coarse-grained pretraining with SupCon rather than instance-level set labels | FACILE-SupCon vs. FSP-Patch · PAIP, 1-shot 3-way, NC | F1: 48.85 -> 52.55 | No clear effect |
| Pretrain on input sets using coarse-grained labels rather than self-supervised SimSiam | FACILE-FSP vs. SimSiam · NCT, 5-shot 9-way, LR | F1: 79.81 -> 87.74 | Helped |
| Use FACILE-FSP rather than FACILE-SupCon for coarse-grained pretraining | FACILE on PAIP · PAIP, 1-shot 3-way, NC | F1: 52.55 -> 48.81 | Mixed |
Surprising findings
- SimCLR underperforms SimSiam on histopathology, which the authors attribute to the small batch size used for SimCLR.
- DINO V2 ViT-B/14 generalizes poorly to histopathology images, performing below several models fine-tuned from ResNet18 on TCGA-pretrained features in some settings.
Limitations
- Separate use of loosely related coarse and fine labels may be inefficient.
- Pretraining with large coarse-grained datasets and set-input models can be expensive.
- Theoretical guarantees rely on assumptions such as relative Lipschitzness, central condition, and a good embedding existing.
Experimental setup
Datasets: CIFAR-100 TCGA GTEx CUB200 LC25000 PAIP NCT-CRC-HE PDAC (private)
Benchmarks: LC25000 PAIP NCT-CRC-HE CIFAR-100 (few-shot meta-test) CUB200 (anomaly detection finetuning) PDAC
Metrics: F1 accuracy 95% confidence interval
Baselines: SimSiam SimCLR FSP-Patch ImageNet (FSP) pretrained ResNet18 MoCo v3 CLIP (ViT-B/16) DINO V2 (ViT-B/14)
Builds on: SupCon SimSiam SimCLR Latent augmentation
Closest papers by meaning
- Minimizing Labeling Cost for Nuclei Instance Segmentation and Classification with Cross-domain Images and Weak Labels (AAAI 2021 · similarity 0.85)
- Prototype-Based Image Prompting for Weakly Supervised Histopathological Image Segmentation (CVPR 2025 · similarity 0.84)
- Dynamic Policy-Driven Adaptive Multi-Instance Learning for Whole Slide Image Classification (CVPR 2024 · similarity 0.84)
- Fine-grained Classes and How to Find Them (ICML 2024 · similarity 0.83)
- Systematic Comparison of Semi-supervised and Self-supervised Learning for Medical Image Classification (CVPR 2024 · similarity 0.83)
- MAPLE: Multi-scale Attribute-enhanced Prompt Learning for Few-shot Whole Slide Image Classification (NeurIPS 2025 · similarity 0.83)
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