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A critical look at the evaluation of GNNs under heterophily: Are we really making progress?

ICLR 2023 · Graph learning › GNN architectures · approach: Simple and scalable GNNs · 21 citations (OpenAlex)

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Measured effects reported in the paper

What was changedWhereMeasuredEffect
remove duplicate nodes (filtered datasets) (ablation)squirrel and chameleon, FSGNN · squirrel/chameleonaccuracy: squirrel 68.93 -> 35.92; chameleon 77.85 -> 40.61Hurt
remove duplicate nodes (ablation)ResNet+adj on chameleon · chameleonaccuracy: 71.07 -> 38.67Hurt
separate ego- and neighbor-embeddings (GAT-sep vs GAT)GAT on roman-empire · roman-empireaccuracy: 80.87 -> 88.75Helped
separate ego- and neighbor-embeddings (GT-sep vs GT)Graph Transformer on roman-empire · roman-empireaccuracy: 86.51 -> 87.32Helped
separate ego- and neighbor-embeddings (GAT-sep vs GAT)GAT on minesweeper · minesweeperROC AUC: 92.01 -> 93.91Helped
separate ego- and neighbor-embeddings (GAT-sep vs GAT)GAT on amazon-ratings · amazon-ratingsaccuracy: 49.09 -> 52.70Helped
separate ego- and neighbor-embeddings (GT-sep vs GT)Graph Transformer on questions · questionsROC AUC: 77.95 -> 78.05Helped
standard GNNs vs heterophily-specific models on new benchmarkbaselines (GCN, SAGE, GAT, GT variants) vs specialized models · proposed 5 heterophilous datasetsaccuracy/ROC AUCHelped
graph-agnostic ResNet vs graph models on new datasetsroman-empire, minesweeper, questions · proposed datasetsaccuracy/ROC AUCNo clear effect

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