Research map / Graph learning / GNN architectures
A critical look at the evaluation of GNNs under heterophily: Are we really making progress?
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Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| remove duplicate nodes (filtered datasets) (ablation) | squirrel and chameleon, FSGNN · squirrel/chameleon | accuracy: squirrel 68.93 -> 35.92; chameleon 77.85 -> 40.61 | Hurt |
| remove duplicate nodes (ablation) | ResNet+adj on chameleon · chameleon | accuracy: 71.07 -> 38.67 | Hurt |
| separate ego- and neighbor-embeddings (GAT-sep vs GAT) | GAT on roman-empire · roman-empire | accuracy: 80.87 -> 88.75 | Helped |
| separate ego- and neighbor-embeddings (GT-sep vs GT) | Graph Transformer on roman-empire · roman-empire | accuracy: 86.51 -> 87.32 | Helped |
| separate ego- and neighbor-embeddings (GAT-sep vs GAT) | GAT on minesweeper · minesweeper | ROC AUC: 92.01 -> 93.91 | Helped |
| separate ego- and neighbor-embeddings (GAT-sep vs GAT) | GAT on amazon-ratings · amazon-ratings | accuracy: 49.09 -> 52.70 | Helped |
| separate ego- and neighbor-embeddings (GT-sep vs GT) | Graph Transformer on questions · questions | ROC AUC: 77.95 -> 78.05 | Helped |
| standard GNNs vs heterophily-specific models on new benchmark | baselines (GCN, SAGE, GAT, GT variants) vs specialized models · proposed 5 heterophilous datasets | accuracy/ROC AUC | Helped |
| graph-agnostic ResNet vs graph models on new datasets | roman-empire, minesweeper, questions · proposed datasets | accuracy/ROC AUC | No clear effect |
Closest papers by meaning
- On the Impact of Feature Heterophily on Link Prediction with Graph Neural Networks (NeurIPS 2024 · similarity 0.93)
- Understanding Heterophily for Graph Neural Networks (ICML 2024 · similarity 0.92)
- Classic GNNs are Strong Baselines: Reassessing GNNs for Node Classification (NeurIPS 2024 · similarity 0.91)
- What Is Missing For Graph Homophily? Disentangling Graph Homophily For Graph Neural Networks (NeurIPS 2024 · similarity 0.91)
- Making Classic GNNs Strong Baselines Across Varying Homophily: A Smoothness–Generalization Perspective (NeurIPS 2025 · similarity 0.91)
- Integrating Co-Training with Edge Discrimination to Enhance Graph Neural Networks Under Heterophily (AAAI 2025 · similarity 0.91)
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