Research map / Probabilistic and scientific modeling / Variational and generative sampling
Variational methods for simulation-based inference
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Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| Use SNVI instead of SNLE with 100-chain MCMC | Pyloric network inference · Pyloric network | runtime for 10k samples: 808 minutes -> 11 minutes | Helped |
| Use SNVI+fKL rather than previous methods | Pyloric network inference · Pyloric network | simulations to obtain posterior: 350,000; 25 times fewer than previous methods | Helped |
| Use posterior samples rather than prior samples | Pyloric network simulator · Pyloric network | valid simulation rate: 1% -> 86% | Helped |
| Use SNVI+fKL instead of 100-chain MCMC | Two moons · Two moons | runtime: up to twenty times faster | Helped |
| Use mass-covering SNVI objectives instead of reverse-KL SNPLA | Two moons and SLCP inference · Two moons and SLCP | C2ST | Helped |
| Add SIR posterior refinement (ablation) | All SNVI variants · Bernoulli GLM, Lotka Volterra, Two moons, and SLCP | C2ST | Helped |
| Use reverse KL rather than a mass-covering objective (ablation) | SNVI / SNPLA · Two moons and SLCP | posterior approximation quality | Hurt |
| Choose fKL, IW-ELBO, or α-divergence as the mass-covering objective (ablation) | SNVI · Bernoulli GLM, Lotka Volterra, Two moons, and SLCP | C2ST after SIR | No clear effect |
| Use likelihood estimation with SNVI instead of SNLE with MCMC | SBI benchmark tasks · Bernoulli GLM, Lotka Volterra, Two moons, and SLCP | runtime | Helped |
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