Research map / Probabilistic and scientific modeling / Molecules and proteins
RNA Secondary Structure Prediction By Learning Unrolled Algorithms
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Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| integrate the post-processing network into training by backpropagating through it (ablation) | E2Efold · RNAStralign test set | F1: 0.721 -> 0.821 | Helped |
| integrate the post-processing network into training by backpropagating through it (ablation) | E2Efold · RNAStralign test set | precision: 0.755 -> 0.866 | Helped |
| integrate the post-processing network into training by backpropagating through it (ablation) | E2Efold · RNAStralign test set | recall: 0.712 -> 0.788 | Helped |
| integrate the post-processing network into training by backpropagating through it (ablation) | E2Efold · RNAStralign test set | F1(S): 0.752 -> 0.833 | Helped |
| use E2Efold rather than CONTRAfold | RNA secondary structure prediction · ArchiveII | F1: 0.638 -> 0.686 | Helped |
| use E2Efold rather than CDPfold | RNA secondary structure prediction · RNAStralign | F1: 0.614 -> 0.821 | Helped |
| use E2Efold rather than LinearFold | RNA secondary structure prediction · RNAStralign | time per sequence: 0.40s vs 0.43s | No clear effect |
| test the RNAStralign-trained model on ArchiveII without retraining | E2Efold · ArchiveII | F1: 0.704 vs 0.662 | Helped |
Closest papers by meaning
- Deciphering RNA Secondary Structure Prediction: A Probabilistic K-Rook Matching Perspective (ICML 2024 · similarity 0.90)
- PriFold: Biological Priors Improve RNA Secondary Structure Predictions (AAAI 2025 · similarity 0.89)
- Enforcing Constraints in RNA Secondary Structure Predictions: A Post-Processing Framework Based on the Assignment Problem (ICML 2024 · similarity 0.89)
- gRNAde: Geometric Deep Learning for 3D RNA inverse design (ICLR 2025 · similarity 0.86)
- RDesign: Hierarchical Data-efficient Representation Learning for Tertiary Structure-based RNA Design (ICLR 2024 · similarity 0.84)
- BAnG: Bidirectional Anchored Generation for Conditional RNA Design (ICML 2025 · similarity 0.84)
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