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Noise-Consistent Siamese-Diffusion for Medical Image Synthesis and Segmentation
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Proposes Siamese-Diffusion, which trains a ControlNet-based Stable Diffusion under mask-only and mask-image prior controls with a Noise Consistency Loss to make mask-only sampling produce higher-fidelity medical image-mask pairs for segmentation augmentation.
Problem
Medical image segmentation is limited by scarce annotated data, and diffusion models used to synthesize image-mask pairs also suffer from data scarcity, so mask-only generators yield low morphological fidelity while mask-image generators lose diversity.
Approach
A Siamese training scheme shares one diffusion model under mask-only (Mask-Diffusion) and mask-image (Image-Diffusion) conditions; a stop-gradient Noise Consistency Loss pulls Mask-Diffusion's predicted noise toward Image-Diffusion's, and only the mask-only branch is used at sampling, keeping diversity while improving fidelity.
Key results
- Siamese-Diffusion improves SANet mDice and mIoU on Polyps by 3.6% and 4.4% over the prior SOTA ArSDM (overall 83.0 mDice / 75.8 mIoU vs 81.5 / 74.1).
- On ISIC2018, UNet improves by 1.52% mDice and 1.64% mIoU with random-mask synthetic data.
- FID on polyp images drops to 62.706 from 98.085 for ArSDM and 70.630 for ControlNet.
Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| augment SANet training with Siamese-Diffusion polyp images | SANet · Polyps, overall | mDice: 79.4 -> 83.0 | Helped |
| augment UNet training with Siamese-Diffusion images made using transformed masks | UNet · ISIC2018 | mDice: 82.19 -> 83.71 | Helped |
| add Dense Hint Input (ablation) | Siamese-Diffusion · Polyps | FID: 70.630 -> 70.479 | Helped |
| add Online-Augmentation (ablation) | Siamese-Diffusion · Polyps | FID: 70.479 -> 65.927 | Helped |
| add Noise Consistency Loss (ablation) | Siamese-Diffusion · Polyps | SANet mDice: 80.5 -> 81.8 | Helped |
| set Noise Consistency Loss weight wc to 0.5 (ablation) | Siamese-Diffusion · Polyps | SANet mDice: 80.5 -> 82.0 | Helped |
| set Noise Consistency Loss weight wc to 1.0 (ablation) | Siamese-Diffusion · Polyps | SANet mDice: 80.5 -> 83.0 | Helped |
| set Noise Consistency Loss weight wc to 1.5 (ablation) | Siamese-Diffusion · Polyps | SANet mDice: 80.5 -> 82.4 | Helped |
| set Noise Consistency Loss weight wc to 2.0 (ablation) | Siamese-Diffusion · Polyps | SANet mDice: 80.5 -> 81.4 | Helped |
| use transformed masks rather than real masks for synthetic ISIC2018 training images (ablation) | UNet · ISIC2018 | mDice: 82.81 -> 83.71 | Helped |
| increase synthetic Polyps training data from threefold to fourfold (ablation) | SegFormer · Polyps | mDice | Hurt |
Surprising findings
- Mask-image ControlNet yields better image morphology but lowers segmentation performance for Polyp-PVT and CTNet, indicating diversity matters as much as fidelity.
- Segmentation models trained on synthetic images from random transformed masks outperform those trained on images from real masks on ISIC2018.
Limitations
- Performance gains decline when augmented data is increased to fourfold on Polyps, attributed to a long-tail problem.
- Image quality metrics such as FID do not reliably track segmentation gains.
Experimental setup
Datasets: Kvasir CVC-ClinicDB ISIC2016 ISIC2018 EndoScene ETIS ColonDB Stain (internal) Faeces (internal)
Benchmarks: EndoScene ClinicDB Kvasir ColonDB ETIS ISIC2016 ISIC2018 Stain Faeces
Metrics: FID KID CLIP-I LPIPS CMMD MOS mDice mIoU
Baselines: SinGAN-Seg T2I-Adapter ArSDM ControlNet Copy-Paste DFMGAN AnomalyDiffusion
Builds on: ControlNet Stable Diffusion DDIM ArSDM
Closest papers by meaning
- Factorized Diffusion Architectures for Unsupervised Image Generation and Segmentation (NeurIPS 2024 · similarity 0.86)
- MedSegDiff-V2: Diffusion-Based Medical Image Segmentation with Transformer (AAAI 2024 · similarity 0.86)
- Consistency Purification: Effective and Efficient Diffusion Purification towards Certified Robustness (NeurIPS 2024 · similarity 0.85)
- DiffusionBlend: Learning 3D Image Prior through Position-aware Diffusion Score Blending for 3D Computed Tomography Reconstruction (NeurIPS 2024 · similarity 0.85)
- High-Fidelity Diffusion-Based Image Editing (AAAI 2024 · similarity 0.85)
- Simplified and Generalized Masked Diffusion for Discrete Data (NeurIPS 2024 · similarity 0.85)
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