Research map / Probabilistic and scientific modeling / Molecules and proteins
Clinical Temporal Relation Extraction with Probabilistic Soft Logic Regularization and Global Inference
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Measured effects reported in the paper
| What was changed | Where | Measured | Effect |
|---|---|---|---|
| add PSL regularization (ablation) | CTRL on I2B2-2012 · I2B2-2012 test | F1: 79.06 -> 80.20 | Helped |
| add global temporal inference (ablation) | CTRL on I2B2-2012 · I2B2-2012 test | F1: 78.76 -> 80.20 | Helped |
| replace random graph insertion with confidence-ranked insertion (ablation) | Global inference on I2B2-2012 · I2B2-2012 test | F1: 79.21 -> 79.44 | Helped |
| anchor the graph with time-time relations before confidence-ranked insertion (ablation) | Global inference on I2B2-2012 · I2B2-2012 test | F1: 79.21 -> 80.20 | Helped |
| add PSL regularization and global temporal inference to the BERT-based classifier | CTRL on I2B2-2012 · I2B2-2012 test | F1: 78.65 -> 80.20 | Helped |
| add PSL regularization and global temporal inference to the BERT-based classifier | CTRL on TB-Dense · TB-Dense test | Micro-average F1: 63.6 -> 65.2 | Helped |
| use PSL dependency rules during training | CTRL-PG on TB-Dense · TB-Dense test | Recall | Helped |
| apply temporal dependency rules to infer predictions | CTRL-PG on I2B2-2012 · I2B2-2012 test case studies | relation correctness | Mixed |
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