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KerGNNs: Interpretable Graph Neural Networks with Graph Kernels

AAAI 2022 · Graph learning › GNN architectures · approach: Subgraph and distance-aware GNNs · 77 citations (OpenAlex)

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Measured effects reported in the paper

What was changedWhereMeasuredEffect
Use KerGNN-2 instead of PKKerGNN · DDtest accuracy (%): 78.0$\pm$3.8 -> 78.9$\pm$3.5Helped
Use KerGNN-2-DRW instead of GNTKKerGNN · NCI1test accuracy (%): 83.5$\pm$1.2 -> 82.8$\pm$1.8Hurt
Use KerGNN-3 instead of Powerful GNNKerGNN · PROTEINStest accuracy (%): 75.9$\pm$3.3 -> 76.5$\pm$3.9Helped
Use KerGNN-1 instead of GCKNKerGNN · ENZYMEStest accuracy (%): 59.3$\pm$5.6 -> 62.1$\pm$5.5Helped
Use KerGNN-1 instead of GNTKKerGNN · IMDB-Btest accuracy (%): 75.9$\pm$3.1 -> 74.4$\pm$4.3Hurt
Use KerGNN-1 instead of GNTKKerGNN · IMDB-Mtest accuracy (%): 52.2$\pm$4.2 -> 51.6$\pm$3.1Hurt
Use KerGNN-2-DRW instead of 1-2-3 GNNKerGNN · REDDIT-Btest accuracy (%): 91.1$\pm$2.1 -> 89.5$\pm$1.6Hurt
Use KerGNN-2-DRW instead of WL-subKerGNN · COLLABtest accuracy (%): 77.5$\pm$2.4 -> 75.1$\pm$2.3Hurt
Use deep random walk kernel instead of standard random walk kernel (ablation)KerGNN-2 · NCI1test accuracy (%): 76.3$\pm$2.6 -> 82.8$\pm$1.8Helped
Use deep random walk kernel instead of standard random walk kernel (ablation)KerGNN-2 · DDtest accuracy (%): 78.9$\pm$3.5 -> 77.0$\pm$4.4Hurt
Use deep random walk kernel instead of standard random walk kernel (ablation)KerGNN-2 · PROTEINStest accuracy (%): 75.5$\pm$4.6 -> 76.1$\pm$4.1Mixed
Increase KerGNN depth from 1 to 3 layers (ablation)KerGNN · NCI1test accuracy (%): 74.3$\pm$2.2 -> 80.5$\pm$1.9Helped

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