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Mol2Image: Improved Conditional Flow Models for Molecule to Image Synthesis

CVPR 2021 · Probabilistic and scientific modeling › Molecules and proteins · approach: Structure-based molecule design with diffusion · 22 citations (OpenAlex)

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Measured effects reported in the paper

What was changedWhereMeasuredEffect
Add contrastive loss to align image latents with molecular embeddings (ablation)Mol2Image · Cell Painting, training moleculesCorr: 58.8 -> 63.2Helped
Add contrastive loss to align image latents with molecular embeddings (ablation)Mol2Image · Cell Painting, held-out moleculesCorr: 55.7 -> 62.6Helped
Add contrastive loss (ablation)Mol2Image · Cell Painting, training moleculesSWD: 3.68 -> 4.63Hurt
Add contrastive loss (ablation)Mol2Image · Cell Painting, held-out moleculesSWD: 3.41 -> 4.27Hurt
Add the Haar pyramid architecture for coarse-to-fine image generation (ablation)Mol2Image · Cell Painting, training moleculesCorr: 60.0 -> 63.2Helped
Add the Haar pyramid architecture for coarse-to-fine image generation (ablation)Mol2Image · Cell Painting, held-out moleculesCorr: 59.1 -> 62.6Helped
Add contrastive learning to train molecular embeddings (ablation)Mol2Image molecular embedding · Morphological label predictionMean AUC: 0.675 -> 0.810Helped
Add contrastive learning to train molecular embeddings (ablation)Mol2Image molecular embedding · Morphological label prediction, held-out moleculesMean AUC: 0.675 -> 0.683Helped

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