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Causal Hidden Markov Model for Time Series Disease Forecasting

CVPR 2021 · Probabilistic and scientific modeling › Causal discovery · approach: Causal discovery from time series · 36 citations (OpenAlex)

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Measured effects reported in the paper

What was changedWhereMeasuredEffect
Separate disease-causative latent variables from other latent features (ablation)Causal-HMM · PPA forecasting test (mean, 10 settings)ACC: 70.94 ± 2.53 -> 71.92 ± 2.73Helped
Separate disease-causative latent variables from other latent features (ablation)Causal-HMM · PPA forecasting test (mean, 10 settings)AUC: 75.53 ± 1.82 -> 79.55 ± 1.62Helped
Add clinical measurements and personal attributes to sequential VAE (ablation)Seq VAE · PPA forecasting test (mean, 10 settings)ACC: 68.86 ± 2.02 -> 70.94 ± 2.53Helped
Add clinical measurements and personal attributes to sequential VAE (ablation)Seq VAE · PPA forecasting test (mean, 10 settings)AUC: 73.19 ± 1.82 -> 75.53 ± 1.82Helped
Use sequential VAE modeling instead of image-only CNN (ablation)PPA forecasting · PPA forecasting test (mean, 10 settings)ACC: 62.67 ± 2.89 -> 68.86 ± 2.02Helped
Use sequential VAE modeling instead of image-only CNN (ablation)PPA forecasting · PPA forecasting test (mean, 10 settings)AUC: 64.97 ± 1.81 -> 73.19 ± 1.82Helped
Classify using disease-related s+v instead of non-disease-related z (ablation)Causal-HMM latent variables · PPA forecasting test (mean, 10 settings)ACC: 62.82 ± 1.33 -> 71.50 ± 1.82Helped
Classify using disease-related s+v instead of non-disease-related z (ablation)Causal-HMM latent variables · PPA forecasting test (mean, 10 settings)AUC: 59.65 ± 0.99 -> 74.87 ± 0.66Helped
Use Causal-HMM rather than LogSparse TransformerPPA forecasting · PPA forecasting test (mean, 10 settings)ACC: 71.82 ± 3.46 -> 71.92 ± 2.73Helped
Use Causal-HMM rather than LogSparse TransformerPPA forecasting · PPA forecasting test (mean, 10 settings)AUC: 76.76 ± 2.74 -> 79.55 ± 1.53Helped
Use more recent observations instead of looking further into the pastPPA forecasting methods · PPA forecasting time-series settingsACCHelped

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